PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	13	CH_ath_259	4	7	0.00000223623
Carica papaya	supercontig_4	13	CH_cpa_200	3	3	0.0000701257
Musa acuminata	chr4	13	CH_mac_251	3	3	0.0000597685
Musa acuminata	chr5	13	CH_mac_250	3	3	0.0000597685
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_658	4	15	0.0000864321
Oryza sativa ssp. indica	Chr12	13	CH_osaindica_72	9	21	1.47421e-17
Solanum lycopersicum	ch12	13	CH_sly_564	3	3	0.000129543
Vitis vinifera	chr6	13	CH_vvi_353	4	4	0.00000271063
Vitis vinifera	chrUn	13	CH_vvi_499	4	7	0.0000941611
Vitis vinifera	chrUn	13	CH_vvi_124	11	64	0.00000000000360254
Vitis vinifera	chrUn	14	CH_vvi_58	11	64	0.00000000000360254
Zea mays	7	13	CH_zma_409	3	4	0.000174087

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V