PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001810
Description: F-box domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	14	CH_ath_46	17	142	0.00014206
Brachypodium distachyon	Bd1	13	CH_bdi_163	15	62	0.000000236004
Brachypodium distachyon	Bd1	13	CH_bdi_305	9	25	0.000072503
Brachypodium distachyon	Bd1	13	CH_bdi_173	8	11	0.000000334952
Brachypodium distachyon	Bd3	13	CH_bdi_21	20	49	6.19747e-16
Brachypodium distachyon	Bd3	13	CH_bdi_398	6	9	0.000323323
Brachypodium distachyon	Bd4	13	CH_bdi_411	10	39	0.000392178
Brachypodium distachyon	Bd5	13	CH_bdi_280	6	7	0.00002804
Brachypodium distachyon	Bd1	14	CH_bdi_26	15	62	0.000000236004
Brachypodium distachyon	Bd1	14	CH_bdi_31	16	103	0.0000544892
Brachypodium distachyon	Bd3	14	CH_bdi_14	20	49	6.19747e-16
Brachypodium distachyon	Bd4	14	CH_bdi_36	10	39	0.000392178
Brachypodium distachyon	Bd4	14	CH_bdi_30	10	32	0.0000460853
Carica papaya	supercontig_130	13	CH_cpa_204	6	23	0.0000844169
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_288	8	11	0.0000000119263
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_731	6	11	0.000171598
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_730	5	6	0.000169178
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_871	7	21	0.000533817
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_184	12	28	0.0000000000663335
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_113	19	76	0.0000000000000428851
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_537	7	14	0.000017152
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_50	22	66	6.01053e-20
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_510	6	8	0.0000107782
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_518	8	21	0.0000130037
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_92	20	77	0.00000000000000223858
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_168	17	77	0.0000000000287009
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_120	13	24	0.0000000000000793888
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_574	7	15	0.0000317719
Oryza sativa ssp. indica	Chr12	13	CH_osaindica_900	5	7	0.000585295
Oryza sativa ssp. indica	Chr12	13	CH_osaindica_451	9	26	0.0000026105
Oryza sativa ssp. indica	Chr02	14	CH_osaindica_115	14	133	0.000333483
Oryza sativa ssp. indica	Chr04	14	CH_osaindica_104	19	227	0.0000348841
Oryza sativa ssp. indica	Chr06	14	CH_osaindica_77	12	28	0.0000000000663335
Oryza sativa ssp. indica	Chr07	14	CH_osaindica_66	19	76	0.0000000000000428851
Oryza sativa ssp. indica	Chr08	14	CH_osaindica_46	22	66	6.01053e-20
Oryza sativa ssp. indica	Chr09	14	CH_osaindica_105	10	46	0.0000368209
Oryza sativa ssp. indica	Chr10	14	CH_osaindica_23	36	177	2.79336e-26
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_69	13	24	0.0000000000000793888
Oryza sativa ssp. indica	Chr12	14	CH_osaindica_99	10	39	0.00000626955
Oryza sativa ssp. indica	Chr09	15	CH_osaindica_74	5	10	0.000344344
Oryza sativa ssp. indica	Chr12	15	CH_osaindica_52	6	17	0.000122696
Oryza sativa ssp. japonica	10	13	CH_osa_99	15	38	0.0000000000000234245
Oryza sativa ssp. japonica	10	13	CH_osa_306	14	79	0.0000000914562
Oryza sativa ssp. japonica	11	13	CH_osa_120	18	80	0.000000000000703946
Oryza sativa ssp. japonica	11	13	CH_osa_498	6	9	0.0000197154
Oryza sativa ssp. japonica	11	13	CH_osa_809	6	14	0.000667256
Oryza sativa ssp. japonica	12	13	CH_osa_263	8	12	0.000000018492
Oryza sativa ssp. japonica	4	13	CH_osa_569	6	10	0.0000487512
Oryza sativa ssp. japonica	4	13	CH_osa_729	7	21	0.00030644
Oryza sativa ssp. japonica	7	13	CH_osa_838	8	36	0.000861511
Oryza sativa ssp. japonica	7	13	CH_osa_80	18	59	0.00000000000000155269
Oryza sativa ssp. japonica	8	13	CH_osa_49	18	37	5.50806e-20
Oryza sativa ssp. japonica	8	13	CH_osa_459	7	14	0.00000977959
Oryza sativa ssp. japonica	9	13	CH_osa_489	8	23	0.0000161706
Oryza sativa ssp. japonica	10	14	CH_osa_29	33	170	3.0706e-24
Oryza sativa ssp. japonica	11	14	CH_osa_49	24	99	3.5911e-19
Oryza sativa ssp. japonica	7	14	CH_osa_60	18	59	0.00000000000000155269
Oryza sativa ssp. japonica	8	14	CH_osa_47	18	37	5.50806e-20
Oryza sativa ssp. japonica	12	15	CH_osa_17	7	12	0.0000000465746
Populus trichocarpa	Chr01	13	CH_ptr_179	8	10	0.0000000000572592
Setaria italica	scaffold_2	13	CH_sit_22	21	34	4.4702e-23
Setaria italica	scaffold_2	13	CH_sit_91	20	64	0.0000000000000269981
Setaria italica	scaffold_2	13	CH_sit_39	25	74	1.2314e-19
Setaria italica	scaffold_2	13	CH_sit_557	5	5	0.000114717
Setaria italica	scaffold_2	13	CH_sit_77	22	77	0.00000000000000433452
Setaria italica	scaffold_6	13	CH_sit_134	14	33	0.0000000000185029
Setaria italica	scaffold_7	13	CH_sit_558	5	5	0.000114717
Setaria italica	scaffold_9	13	CH_sit_419	13	62	0.0000093276
Setaria italica	scaffold_2	14	CH_sit_11	42	150	2.32487e-31
Setaria italica	scaffold_2	14	CH_sit_21	34	127	5.02725e-24
Setaria italica	scaffold_2	14	CH_sit_44	20	64	0.0000000000000269981
Setaria italica	scaffold_5	14	CH_sit_63	12	44	0.00000164457
Setaria italica	scaffold_6	14	CH_sit_47	14	33	0.0000000000185029
Setaria italica	scaffold_9	14	CH_sit_70	13	62	0.0000093276
Solanum lycopersicum	ch05	13	CH_sly_642	4	4	0.000295575
Solanum lycopersicum	ch07	13	CH_sly_643	4	4	0.000295575
Solanum lycopersicum	ch08	13	CH_sly_318	6	8	0.000000736455
Solanum lycopersicum	ch08	13	CH_sly_274	6	7	0.000000185625
Solanum lycopersicum	ch08	13	CH_sly_572	5	8	0.000153932
Solanum lycopersicum	ch09	13	CH_sly_430	5	6	0.0000167578
Solanum lycopersicum	ch08	14	CH_sly_71	11	100	0.000130021
Sorghum bicolor	chr_10	13	CH_sbi_294	7	9	0.000000557492
Sorghum bicolor	chr_2	13	CH_sbi_35	20	42	5.76083e-20
Sorghum bicolor	chr_2	13	CH_sbi_497	11	55	0.0000824436
Sorghum bicolor	chr_2	13	CH_sbi_125	13	29	0.0000000000211045
Sorghum bicolor	chr_5	13	CH_sbi_297	12	47	0.000000706082
Sorghum bicolor	chr_7	13	CH_sbi_412	9	28	0.0000242003
Sorghum bicolor	chr_2	14	CH_sbi_48	13	29	0.0000000000211045
Sorghum bicolor	chr_2	14	CH_sbi_73	11	55	0.0000824436
Sorghum bicolor	chr_2	14	CH_sbi_49	23	144	0.000000000028326
Sorghum bicolor	chr_2	14	CH_sbi_22	32	109	7.97099e-26
Sorghum bicolor	chr_5	14	CH_sbi_62	12	47	0.000000706082
Vitis vinifera	chr13	13	CH_vvi_352	5	7	0.00000266774
Zea mays	7	13	CH_zma_127	6	7	0.0000000370967
Zea mays	7	13	CH_zma_284	8	43	0.0000308887
Zea mays	7	14	CH_zma_25	15	280	0.000099095

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V