PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd2	13	CH_bdi_329	3	4	0.000110634
Chlamydomonas reinhardtii	chromosome_12	13	CH_cre_74	3	3	0.0000254271
Chlamydomonas reinhardtii	chromosome_16	13	CH_cre_75	3	3	0.0000254271
Chlamydomonas reinhardtii	chromosome_16	15	CH_cre_10	3	3	0.0000156004
Populus trichocarpa	Chr13	13	CH_ptr_498	4	10	0.000026377
Populus trichocarpa	Chr19	13	CH_ptr_67	10	25	1.25832e-18
Populus trichocarpa	Chr19	14	CH_ptr_60	10	25	1.25832e-18
Vitis vinifera	chr1	13	CH_vvi_637	3	9	0.000483422
Vitis vinifera	chr8	13	CH_vvi_96	6	8	0.0000000000000187559

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V