PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: ZM01G21790
Organism: Zea mays

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
ZM09G17670	No description available.	9	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL5G30790	No description available.	scaffold_5	-	View
AL7G25810	No description available.	scaffold_7	-	View
AL1G33680	No description available.	scaffold_1	+	View
AL4G32330	No description available.	scaffold_4	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G32361	RING/U-box superfamily protein Putative RING-H2 finger protein ATL1F precursor. ATL1F; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	1	+	View
AT4G17245	RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G47610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	4	+	View
AT3G60220	TOXICOS EN LEVADURA 4 (ATL4); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 8923 Blast hits to 8901 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 2301; Fungi - 667; Plants - 4759; Viruses - 54; Other Eukaryotes - 1134 (source: NCBI BLink). TOXICOS EN LEVADURA 4 Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4).	3	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR09G26580	No description available.	A09	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL05G03210	No description available.	Chr5	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00006G03630	No description available.	CM3.5_scaffold00006	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00052G00680	No description available.	supercontig_52	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_005G25550	No description available.	scaffold_5	-	View
CRU_007G23100	No description available.	scaffold_7	-	View
CRU_004G26150	No description available.	scaffold_4	-	View
CRU_001G29310	No description available.	scaffold_1	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00001G00340	No description available.	scaffold00001	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV7G21000	RING-H2 finger protein ATL3J (probable)	LG7	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM03G24930	No description available.	Gm03	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR04G16800	No description available.	Chr04	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME08265G04060	No description available.	scaffold08265	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS10G41660	zinc finger, C3HC4 type domain containing protein, expressed	10	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_002G12040	No description available.	scaffold_2	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC29709G00350	No description available.	29709	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL01G088440	Ring H2 finger protein (AHRD V1 -- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type	ch01	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST01G028480	RING finger 1-like (AHRD V1 -- Q69KM4_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type	chr01	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0001G39730	No description available.	scaffold_1	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G16940	similar to AT4G17245\|zinc finger (C3HC4-type RING finger) family protein	ch7-4	-	View
TP5G03000	similar to AT3G60220\|ATL4	ch5-1	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV15G01640	name=GSVIVG01018343001;	chr15	-	View