PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: VV11G06750
Organism: Vitis vinifera

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
VV09G07080	name=GSVIVG01017343001;	chr9	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G16880	No description available.	scaffold_3	-	View
AL4G06600	No description available.	scaffold_4	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G15880	WUS-interacting protein 2 (WSIP2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G15750.4); Has 22596 Blast hits to 13790 proteins in 615 species: Archae - 20; Bacteria - 4432; Metazoa - 7625; Fungi - 4980; Plants - 2394; Viruses - 0; Other Eukaryotes - 3145 (source: NCBI BLink). WUS-interacting protein 2	3	-	View
AT2G25420	transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WUS-interacting protein 2 (TAIR:AT3G15880.1); Has 3410 Blast hits to 2683 proteins in 316 species: Archae - 2; Bacteria - 469; Metazoa - 1038; Fungi - 599; Plants - 625; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink). transducin family protein / WD-40 repeat family protein	2	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR01G33000	No description available.	A01	+	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV8G02260	No description available.	Bvchr8.sca018	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL11G15820	No description available.	Chr11	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00046G00270	No description available.	supercontig_46	-	View
CP00010G02480	No description available.	supercontig_10	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_003G14860	No description available.	scaffold_3	-	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00051G00730	No description available.	scaffold00051	-	View
CS00005G02320	No description available.	scaffold00005	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV1G05010	Vegetative incompatibility protein HET-E-1 (probable)	LG1	+	View
FV6G25800	Vegetative incompatibility protein HET-E-1 (probable)	LG6	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM13G22720	No description available.	Gm13	-	View
GM17G12110	No description available.	Gm17	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR10G06220	No description available.	Chr10	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ4G031890	No description available.	chr4	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD02G002770	No description available.	2	+	View
MD15G010330	No description available.	15	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT4G114980	topless-like protein	chr4	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_007G26450	No description available.	scaffold_7	-	View
PPE_003G07440	No description available.	scaffold_3	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT06G06680	No description available.	Chr06	+	View
PT18G12800	No description available.	Chr18	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC29927G00130	No description available.	29927	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL07G008040	WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI)%3B contains Interpro domain(s) IPR017986 WD40 repeat%2C region	ch07	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST07G008440	WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI); contains Interpro domain(s) IPR017986 WD40 repeat, region	chr07	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0006G02500	No description available.	scaffold_6	-	View
TC0009G12520	No description available.	scaffold_9	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP3G14210	similar to AT3G15880\|protein binding	ch3-1	-	View