PLAZA 3.0 Dicots gene overview : AL3G16880

Gene: AL3G16880 (Arabidopsis lyrata)

Overview

Gene Identifier: AL3G16880
Transcript Identifier: AL3G16880.1
Gene Type: Coding gene
Location: scaffold_3 : 6666381-6674783 : negative

Family

Gene family: HOM03D000407
(309 genes in 29 species)
specific family
Subfamily: ORTHO03D000075
(199 genes in 29 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Topless-related protein 4

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	479043
GeneName	g479043
id	PAC:16043794

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	InterPro	regulation of transcription, DNA-dependent
GO:0010072	ISO	PLAZA Integrative Orthology	primary shoot apical meristem specification	AT3G15880
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03D000407

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	Genome Project	protein binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001680	WD40 repeat
IPR015943	WD40/YVTN repeat-like-containing domain
IPR006595	CTLH, C-terminal LisH motif
IPR017986	WD40-repeat-containing domain
IPR019775	WD40 repeat, conserved site
IPR006594	LisH dimerisation motif
IPR027728	Topless family

Mapman id	Description
33.99	development.unspecified

No SignalP domains detected for this gene.