Anchorpoints
- Gene id
- SL02G077890
- Organism
- Solanum lycopersicum
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL07G053800 | E3 ubiquitin-protein ligase RING1 (AHRD V1 *--- B0WQV3_CULQU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch07 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G29520 | No description available. | scaffold_1 | + | View |
AL1G03080 | No description available. | scaffold_1 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G03770 | RING 1B Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. RING 1B (RING1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1). | 1 | + | View |
AT1G28327 | unknown protein; Has 52 Blast hits to 52 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 1 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR10G03880 | No description available. | A10 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV8G11980 | No description available. | Bvchr8.sca001 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL01G23240 | No description available. | Chr1 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00007G02930 | No description available. | CM3.5_scaffold00007 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00083G00690 | No description available. | supercontig_83 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G02680 | No description available. | scaffold_1 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00007G00170 | No description available. | scaffold00007 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0011G08760 | No description available. | scaffold_11 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV6G21760 | E3 ubiquitin-protein ligase RING2-B (RING1b-B) (probable) | LG6 | + | View |
FV3G12840 | E3 ubiquitin-protein ligase RING2 (RING1b) (similar to) | LG3 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM06G44476 | No description available. | Gm06 | - | View |
GM13G24571 | No description available. | Gm13 | - | View |
GM13G37120 | No description available. | Gm13 | - | View |
GM12G13270 | No description available. | Gm12 | + | View |
GM12G33300 | No description available. | Gm12 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR10G15550 | No description available. | Chr10 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ3G039660 | No description available. | chr3 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD09G028040 | No description available. | 9 | - | View |
MD10G023360 | No description available. | 10 | - | View |
MD17G017760 | No description available. | 17 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME02307G00390 | No description available. | scaffold02307 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT4G088520 | E3 ubiquitin-protein ligase RING1a-like protein C putative | chr4 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_004G04790 | No description available. | scaffold_4 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT07G13870 | No description available. | Chr07 | - | View |
PT11G05630 | No description available. | Chr11 | + | View |
PT04G04700 | No description available. | Chr04 | + | View |
PT17G01300 | No description available. | Chr17 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30190G00290 | No description available. | 30190 | - | View |
RC29983G00550 | No description available. | 29983 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST07G021450 | E3 ubiquitin-protein ligase RING1 (AHRD V1 *--- E2BLF1_9HYME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr07 | + | View |
ST02G020780 | E3 ubiquitin-protein ligase RING1 (AHRD V1 *--- E2BLF1_9HYME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr02 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0006G17930 | No description available. | scaffold_6 | - | View |
TC0002G17800 | No description available. | scaffold_2 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G24550 | No description available. | ch1-1 | + | View |
TP1G02630 | similar to AT1G03770|RING1B (RING 1B) | ch1-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV12G01820 | name=GSVIVG01020579001; | chr12 | - | View |
VV10G01240 | name=GSVIVG01021091001; | chr10 | + | View |