PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: GR11G00700
Organism: Gossypium raimondii

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
GR09G11720	No description available.	Chr09	+	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G21840	No description available.	scaffold_7	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G30700	FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30710.1); Has 4734 Blast hits to 4686 proteins in 819 species: Archae - 47; Bacteria - 2248; Metazoa - 0; Fungi - 1602; Plants - 666; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). FAD-binding Berberine family protein	1	+	View
AT5G44360	FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20860.1); Has 4918 Blast hits to 4788 proteins in 768 species: Archae - 52; Bacteria - 2097; Metazoa - 4; Fungi - 1714; Plants - 788; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). FAD-binding Berberine family protein	5	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR06G38060	No description available.	A06	+	View
BR01G11170	No description available.	A01	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL01G25360	No description available.	Chr1	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00007G00640	No description available.	CM3.5_scaffold00007	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00166G00470	No description available.	supercontig_166	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G27770	No description available.	scaffold_1	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00008G03170	No description available.	scaffold00008	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD14G007610	No description available.	14	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME07478G00840	No description available.	scaffold07478	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G022850	FAD-binding domain-containing protein (AHRD V1 **-- D7MFH8_ARALY)%3B contains Interpro domain(s) IPR006094 FAD linked oxidase%2C N-terminal	ch02	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0006G01170	No description available.	scaffold_6	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP1G26600	similar to AT1G30710\|FAD-binding domain-containing protein	ch1-1	+	View