Anchorpoints
- Gene id
- GR01G23240
- Organism
- Gossypium raimondii
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR04G22660 | No description available. | Chr04 | + | View |
GR03G00380 | No description available. | Chr03 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL3G28650 | No description available. | scaffold_3 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G25070 | Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto. RPM1 interacting protein 4 RPM1 interacting protein 4 (RIN4); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: defense protein-related (TAIR:AT5G48657.2); Has 373 Blast hits to 371 proteins in 56 species: Archae - 0; Bacteria - 8; Metazoa - 13; Fungi - 2; Plants - 331; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | 3 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL09G08310 | No description available. | Chr9 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00046G00710 | No description available. | CM3.5_scaffold00046 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_003G24430 | No description available. | scaffold_3 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00029G00840 | No description available. | scaffold00029 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0011G17690 | No description available. | scaffold_11 | - | View |
EG0008G06690 | No description available. | scaffold_8 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM08G46400 | No description available. | Gm08 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME07528G00370 | No description available. | scaffold07528 | - | View |
ME07827G00060 | No description available. | scaffold07827 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT7G056147 | RPM1 interacting protein 4 transcript protein | chr7 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_008G21510 | No description available. | scaffold_8 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G24540 | No description available. | Chr02 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30217G00180 | No description available. | 30217 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL12G098440 | RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X0_9ASTR)%3B contains Interpro domain(s) IPR008700 Defence response%2C Rin4 | ch12 | + | View |
SL09G059430 | RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X9_9ASTR)%3B contains Interpro domain(s) IPR008700 Defence response%2C Rin4 | ch09 | + | View |
SL06G083390 | RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0Y3_9ASTR)%3B contains Interpro domain(s) IPR008700 Defence response%2C Rin4 | ch06 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST09G014900 | RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X9_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 | chr09 | - | View |
ST06G033810 | RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0Y3_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 | chr06 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G21650 | No description available. | scaffold_1 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP3G22670 | similar to AT3G25070|RIN4 (RPM1 INTERACTING PROTEIN 4) | ch3-2 | + | View |