Anchorpoints

Gene id
GR01G23240
Organism
Gossypium raimondii

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GR04G22660No description available.Chr04+View
GR03G00380No description available.Chr03+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G28650No description available.scaffold_3+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G25070Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto. RPM1 interacting protein 4 RPM1 interacting protein 4 (RIN4); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: defense protein-related (TAIR:AT5G48657.2); Has 373 Blast hits to 371 proteins in 56 species: Archae - 0; Bacteria - 8; Metazoa - 13; Fungi - 2; Plants - 331; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).3+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G08310No description available.Chr9-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00046G00710No description available.CM3.5_scaffold00046+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G24430No description available.scaffold_3+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00029G00840No description available.scaffold00029+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G17690No description available.scaffold_11-View
EG0008G06690No description available.scaffold_8-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G46400No description available.Gm08-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07528G00370No description available.scaffold07528-View
ME07827G00060No description available.scaffold07827+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G056147RPM1 interacting protein 4 transcript proteinchr7+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G21510No description available.scaffold_8-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G24540No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30217G00180No description available.30217-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G098440RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X0_9ASTR)%3B contains Interpro domain(s) IPR008700 Defence response%2C Rin4ch12+View
SL09G059430RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X9_9ASTR)%3B contains Interpro domain(s) IPR008700 Defence response%2C Rin4ch09+View
SL06G083390RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0Y3_9ASTR)%3B contains Interpro domain(s) IPR008700 Defence response%2C Rin4ch06-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST09G014900RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X9_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4chr09-View
ST06G033810RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0Y3_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4chr06-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G21650No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G22670similar to AT3G25070|RIN4 (RPM1 INTERACTING PROTEIN 4)ch3-2+View


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Gene id
Species
Description
Chromosome
Strand