Anchorpoints

Gene id
GM04G31847
Organism
Glycine max

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GM02G13401No description available.Gm02+View
GM08G27670No description available.Gm08+View
GM17G08861No description available.Gm17+View
GM18G50900No description available.Gm18+View
GM03G02191No description available.Gm03+View
GM06G22650No description available.Gm06+View
GM05G07286No description available.Gm05+View
GM19G04320No description available.Gm19+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G17400No description available.scaffold_2-View
AL6G15630No description available.scaffold_6-View
AL8G27080No description available.scaffold_8-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G30260AGAMOUS-like 79 (AGL79); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 7337 Blast hits to 7335 proteins in 920 species: Archae - 0; Bacteria - 2; Metazoa - 637; Fungi - 301; Plants - 6322; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). AGAMOUS-like 793+View
AT5G60910AGAMOUS-like 8 AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). MADS box gene negatively regulated by APETALA15-View
AT3G02310MADS-box protein, binds K domain of AG in vivo K-box region and MADS-box transcription factor family protein SEPALLATA 2 (SEP2); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7363 Blast hits to 7362 proteins in 916 species: Archae - 3; Bacteria - 0; Metazoa - 630; Fungi - 305; Plants - 6350; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).3-View
AT5G15800SEPALLATA1 (SEP1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G02310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). K-box region and MADS-box transcription factor family protein Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.5-View
AT1G69120K-box region and MADS-box transcription factor family protein APETALA1 (AP1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 8031 Blast hits to 8015 proteins in 981 species: Archae - 10; Bacteria - 56; Metazoa - 785; Fungi - 329; Plants - 6623; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink). Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G05400No description available.A09-View
BR02G37730No description available.A02-View
BR02G19640No description available.A02-View
BR06G31530No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL04G11410No description available.Chr4-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00001G01390No description available.CM3.5_scaffold00001+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G01580No description available.supercontig_1+View
CP00014G02250No description available.supercontig_14+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G01340No description available.scaffold_3-View
CRU_005G07940No description available.scaffold_5+View
CRU_002G14770No description available.scaffold_2-View
CRU_008G20980No description available.scaffold_8-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00019G01770No description available.scaffold00019-View
CS00030G00760No description available.scaffold00030-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G21260No description available.scaffold_11+View
EG0002G05450No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G42060Agamous-like MADS-box protein AGL8 homolog (putative)LG6-View
FV0G03660Floral homeotic protein APETALA 1 (putative)scf0513158-View
FV5G11740Agamous-like MADS-box protein AGL8 homolog (putative)LG5-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G10300No description available.Chr03+View
GR01G20730No description available.Chr01-View
GR06G26840No description available.Chr06+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G030390No description available.chr4+View
LJ1G039100No description available.chr1+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G005140No description available.9+View
MD13G003850No description available.13-View
MD06G016940No description available.6-View
MD14G020330No description available.14+View
MD17G005530No description available.17+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04043G01720No description available.scaffold04043-View
ME06656G00870No description available.scaffold06656-View
ME08359G01370No description available.scaffold08359-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G109810MADS-box transcription factorchr4+View
MT2G461710MADS-box transcription factor family proteinchr2+View
MT7G016600MADS-box transcription factorchr7+View
MT6G015975MADS-box transcription factorchr6+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G41370MADS-box transcription factor 18 OsMADS18 - MADS-box family gene with MIKCc type-box, expressed7+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G30210No description available.scaffold_1+View
PPE_005G21190No description available.scaffold_5+View
PPE_003G22850No description available.scaffold_3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G09970No description available.Chr17+View
PT10G15410No description available.Chr10-View
PT08G09840No description available.Chr08+View
PT04G11540No description available.Chr04-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30138G01100No description available.30138-View
RC30174G04740No description available.30174-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL05G056620Myocyte-specific enhancer factor 2D (AHRD V1 *-*- MEF2D_HUMAN)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch05-View
SL02G065730MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-boxch02-View
SL03G114830MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY)%3B contains Interpro domain(s) IPR002487 Transcription factor%2C K-boxch03-View
SL02G089200MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G012590MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002487 Transcription factor, K-boxchr02-View
ST03G028370MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY); contains Interpro domain(s) IPR002487 Transcription factor, K-boxchr03-View
ST05G006010MADS-box transcription factor MADS-MC (AHRD V1 *-** Q8S4L5_SOLLC); contains Interpro domain(s) IPR002487 Transcription factor, K-boxchr05+View
ST02G033670MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-boxchr02-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G32510No description available.scaffold_2-View
TC0003G10960No description available.scaffold_3+View
TC0004G11010No description available.scaffold_4+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G24190similar to AT1G69120|AP1 (APETALA1)ch5-6-View
TP3G01370similar to AT3G02310|SEP2 (SEPALLATA 2)ch3-1-View
TP2G24220similar to AT5G60910|AGL8 (agamous-like 8)ch2-4-View
TP2G18120similar to AT3G30260|AGL79 (AGAMOUS-LIKE 79)ch2-4+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G10760name=GSVIVG01012250001;chr1-View
VV17G04850name=GSVIVG01008140001;chr17-View
VV14G16100name=GSVIVG01036549001;chr14-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G26720LOC5420457-View


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Gene id
Species
Description
Chromosome
Strand