Anchorpoints

Gene id
CS00010G01380
Organism
Citrus sinensis

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G04890protodermal factor 2 (PDF2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. protodermal factor 24-View
AT4G21750MERISTEM LAYER 1 (ATML1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein4+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G23940No description available.A09+View
BR10G02500No description available.A10+View
BR03G45950No description available.A03+View
BR01G12010No description available.A01+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV0G14410No description available.Bvchr8_un.sca003+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G22220No description available.Chr1-View
CL03G04760No description available.Chr3-View
CL05G15820No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00001G05820No description available.CM3.5_scaffold00001-View
CM00007G04020No description available.CM3.5_scaffold00007+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00097G00470No description available.supercontig_97-View
CP00198G00180No description available.supercontig_198+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G31610No description available.scaffold_6-View
CRU_007G18710No description available.scaffold_7-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G31120No description available.scaffold_5-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G00530Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (putative)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM12G32050No description available.Gm12-View
GM13G36471No description available.Gm13+View
GM13G38430No description available.Gm13+View
GM11G00570No description available.Gm11+View
GM10G39720No description available.Gm10-View
GM01G45070No description available.Gm01-View
GM20G28010No description available.Gm20+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR11G01620No description available.Chr11-View
GR10G17780No description available.Chr10+View
GR02G08450No description available.Chr02+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G001020No description available.chr1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD05G001810No description available.5-View
MD10G026020No description available.10+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03241G00670No description available.scaffold03241-View
ME12753G00130No description available.scaffold12753-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G088470homeobox leucine zipper proteinchr2-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G57890Homeobox domain containing protein, expressed Homeobox-leucine zipper protein TF11+View
OS08G04190Homeobox-leucine zipper protein ROC7 homeobox and START domains containing protein, putative, expressed8-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G02300No description available.scaffold_4-View
PPE_004G19720No description available.scaffold_4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT11G02500No description available.Chr11-View
PT04G02040No description available.Chr04-View
PT01G41950No description available.Chr01+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC28166G00560No description available.28166+View
RC29842G01280No description available.29842-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G080260Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL)%3B contains Interpro domain(s) IPR002913 Lipid-binding STARTch02+View
SL03G031760Homeobox-leucine zipper protein ATHB-14 (AHRD V1 *-*- ATB14_ARATH)%3B contains Interpro domain(s) IPR002913 Lipid-binding STARTch03-View
SL10G005330Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH)%3B contains Interpro domain(s) IPR002913 Lipid-binding STARTch10-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G006320Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding STARTchr10+View
ST02G023450Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding STARTchr02+View
ST03G008270Homeobox-leucine zipper protein ATHB-8 (AHRD V1 ***- ATHB8_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding STARTchr03-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0007G04480No description available.scaffold_7-View
TC0006G20880No description available.scaffold_6+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G19920similar to AT4G21750|ATML1 (MERISTEM LAYER 1)ch7-4+View
TP6G04070similar to AT4G04890|PDF2 (PROTODERMAL FACTOR 2)ch6-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G00570name=GSVIVG01001986001;chr19+View
VV10G00420name=GSVIVG01012643001;chr10+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM10G07610No description available.10+View
ZM03G29850No description available.3-View


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Description
Chromosome
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