Anchorpoints
- Gene id
- CS00010G01380
- Organism
- Citrus sinensis
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT4G04890 | protodermal factor 2 (PDF2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. protodermal factor 2 | 4 | - | View |
AT4G21750 | MERISTEM LAYER 1 (ATML1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | 4 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G23940 | No description available. | A09 | + | View |
BR10G02500 | No description available. | A10 | + | View |
BR03G45950 | No description available. | A03 | + | View |
BR01G12010 | No description available. | A01 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV0G14410 | No description available. | Bvchr8_un.sca003 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL01G22220 | No description available. | Chr1 | - | View |
CL03G04760 | No description available. | Chr3 | - | View |
CL05G15820 | No description available. | Chr5 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00001G05820 | No description available. | CM3.5_scaffold00001 | - | View |
CM00007G04020 | No description available. | CM3.5_scaffold00007 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00097G00470 | No description available. | supercontig_97 | - | View |
CP00198G00180 | No description available. | supercontig_198 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_006G31610 | No description available. | scaffold_6 | - | View |
CRU_007G18710 | No description available. | scaffold_7 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0005G31120 | No description available. | scaffold_5 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV3G00530 | Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (putative) | LG3 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM12G32050 | No description available. | Gm12 | - | View |
GM13G36471 | No description available. | Gm13 | + | View |
GM13G38430 | No description available. | Gm13 | + | View |
GM11G00570 | No description available. | Gm11 | + | View |
GM10G39720 | No description available. | Gm10 | - | View |
GM01G45070 | No description available. | Gm01 | - | View |
GM20G28010 | No description available. | Gm20 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR11G01620 | No description available. | Chr11 | - | View |
GR10G17780 | No description available. | Chr10 | + | View |
GR02G08450 | No description available. | Chr02 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ1G001020 | No description available. | chr1 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD05G001810 | No description available. | 5 | - | View |
MD10G026020 | No description available. | 10 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03241G00670 | No description available. | scaffold03241 | - | View |
ME12753G00130 | No description available. | scaffold12753 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT2G088470 | homeobox leucine zipper protein | chr2 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS01G57890 | Homeobox domain containing protein, expressed Homeobox-leucine zipper protein TF1 | 1 | + | View |
OS08G04190 | Homeobox-leucine zipper protein ROC7 homeobox and START domains containing protein, putative, expressed | 8 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_004G02300 | No description available. | scaffold_4 | - | View |
PPE_004G19720 | No description available. | scaffold_4 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT11G02500 | No description available. | Chr11 | - | View |
PT04G02040 | No description available. | Chr04 | - | View |
PT01G41950 | No description available. | Chr01 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC28166G00560 | No description available. | 28166 | + | View |
RC29842G01280 | No description available. | 29842 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G080260 | Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL)%3B contains Interpro domain(s) IPR002913 Lipid-binding START | ch02 | + | View |
SL03G031760 | Homeobox-leucine zipper protein ATHB-14 (AHRD V1 *-*- ATB14_ARATH)%3B contains Interpro domain(s) IPR002913 Lipid-binding START | ch03 | - | View |
SL10G005330 | Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH)%3B contains Interpro domain(s) IPR002913 Lipid-binding START | ch10 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G006320 | Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START | chr10 | + | View |
ST02G023450 | Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START | chr02 | + | View |
ST03G008270 | Homeobox-leucine zipper protein ATHB-8 (AHRD V1 ***- ATHB8_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START | chr03 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0007G04480 | No description available. | scaffold_7 | - | View |
TC0006G20880 | No description available. | scaffold_6 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP7G19920 | similar to AT4G21750|ATML1 (MERISTEM LAYER 1) | ch7-4 | + | View |
TP6G04070 | similar to AT4G04890|PDF2 (PROTODERMAL FACTOR 2) | ch6-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV19G00570 | name=GSVIVG01001986001; | chr19 | + | View |
VV10G00420 | name=GSVIVG01012643001; | chr10 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM10G07610 | No description available. | 10 | + | View |
ZM03G29850 | No description available. | 3 | - | View |