Anchorpoints

Gene id
CRU_007G07470
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CRU_004G05160No description available.scaffold_4+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G08770No description available.scaffold_7+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G32500K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). K+ transporter 5 Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).4+View
AT2G25600Shaker pollen inward K+ channel (SPIK); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding, potassium channel activity; INVOLVED IN: pollen tube growth; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: K+ transporter 5 (TAIR:AT4G32500.1); Has 83148 Blast hits to 34215 proteins in 1581 species: Archae - 129; Bacteria - 8355; Metazoa - 40552; Fungi - 7952; Plants - 3977; Viruses - 1178; Other Eukaryotes - 21005 (source: NCBI BLink). Encodes SPIK, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutant plants have impaired pollen-tube growth. Shaker pollen inward K+ channel2+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G05300No description available.A01+View
BR09G42510No description available.A09-View
BR03G52960No description available.A03-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM01596G03720No description available.CM3.5_scaffold01596+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00005G00360No description available.scaffold00005-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0003G22620No description available.scaffold_3-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G39100Potassium channel KAT3 (similar to)LG2+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G02940No description available.Chr01+View
GR13G21820No description available.Chr13-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD15G005320No description available.15+View
MD08G014240No description available.8+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G108320potassium channel KAT3 proteinchr3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT18G03550No description available.Chr18-View
PT06G24500No description available.Chr06+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G068000Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (AHRD V1 *-** HCN2_HUMAN)%3B contains Interpro domain(s) IPR000595 Cyclic nucleotide-bindingch08-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G018460Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (AHRD V1 *-** HCN2_HUMAN); contains Interpro domain(s) IPR000595 Cyclic nucleotide-bindingchr08-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G05080similar to AT2G25600|SPIK (Shaker Pollen Inward K+ channel)ch4-2+View


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Gene id
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Chromosome
Strand