Anchorpoints

Gene id
CRU_002G18620
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G21790No description available.scaffold_2+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G72970HOTHEAD (HTH); CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G12570.1); Has 10392 Blast hits to 10274 proteins in 1087 species: Archae - 4; Bacteria - 3747; Metazoa - 796; Fungi - 1463; Plants - 312; Viruses - 12; Other Eukaryotes - 4058 (source: NCBI BLink). Glucose-methanol-choline (GMC) oxidoreductase family protein Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.1+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00036G00190No description available.scaffold00036+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G21830No description available.A02+View
BR07G28970No description available.A07-View
BR07G21030No description available.A07-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV7G03570No description available.Bvchr7.sca021-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL07G12480No description available.Chr7-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00018G02930No description available.CM3.5_scaffold00018+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00131G00500No description available.supercontig_131+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00032G01030No description available.scaffold00032+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G26390No description available.scaffold_6+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G20620Protein HOTHEAD, Precursor (putative)LG4-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM15G02790No description available.Gm15+View
GM08G20600No description available.Gm08-View
GM13G42630No description available.Gm13-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G14200No description available.Chr09-View
GR11G06430No description available.Chr11+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD13G025210No description available.13+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05875G00610No description available.scaffold05875+View
ME12525G00710No description available.scaffold12525-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G024110No description available.chr5-View
MT2G100070glucose-methanol-choline (GMC) oxidoreductase family proteinchr2-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G03590No description available.scaffold_3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G20080No description available.Chr01-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC28694G00130No description available.28694-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G062600Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2)%3B contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductasech06+View
SL03G121600Choline dehydrogenase (AHRD V1 ***- B0WJG6_CULQU)%3B contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductasech03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G035350Choline dehydrogenase (AHRD V1 ***- E4PGT0_MARAH); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductasechr03-View
ST06G021680Choline dehydrogenase (AHRD V1 ***- A4GHK4_9BACT); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductasechr06+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G11300No description available.scaffold_6-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G27940similar to AT1G72970|HTH (HOTHEAD)ch5-6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV09G03220name=GSVIVG01016856001;chr9+View


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Gene id
Species
Description
Chromosome
Strand