PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: BR00G00040
Organism: Brassica rapa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
BR05G30060	No description available.	A05	+	View
BR03G33150	No description available.	A03	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G13230	No description available.	scaffold_3	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G56190	Phosphoglycerate kinase family protein Phosphoglycerate kinase family protein; FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase 1 (TAIR:AT3G12780.1); Has 10902 Blast hits to 10876 proteins in 3041 species: Archae - 254; Bacteria - 5279; Metazoa - 453; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4208 (source: NCBI BLink).	1	+	View
AT3G12780	phosphoglycerate kinase 1 nuclear phosphoglycerate kinase (PGK1) phosphoglycerate kinase 1 (PGK1); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, response to cold, glycolysis, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10843 Blast hits to 10817 proteins in 3010 species: Archae - 254; Bacteria - 5217; Metazoa - 451; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4213 (source: NCBI BLink).	3	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00017G01120	No description available.	CM3.5_scaffold00017	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_003G11620	No description available.	scaffold_3	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0006G11800	No description available.	scaffold_6	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL07G066600	Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU)%3B contains Interpro domain(s) IPR001576 Phosphoglycerate kinase	ch07	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST07G027100	Phosphoglycerate kinase (AHRD V1 ***- Q2XPV6_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase	chr07	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP1G41830	similar to AT1G56190\|phosphoglycerate kinase, putative	ch1-2	+	View
TP3G10950	similar to AT3G12780\|PGK1 (PHOSPHOGLYCERATE KINASE 1)	ch3-1	-	View