Anchorpoints

Gene id
ATR_00010G04470
Organism
Amborella trichopoda

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G02960RING/FYVE/PHD zinc finger superfamily protein RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G14260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).2-View
AT1G14260RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink). RING/FYVE/PHD zinc finger superfamily protein1+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G02670No description available.Bvchr6.sca028+View
BV5G00860No description available.Bvchr5.sca022+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G25250No description available.Chr5+View
CL04G12030No description available.Chr4+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00016G04200No description available.CM3.5_scaffold00016-View
CM00001G00740No description available.CM3.5_scaffold00001-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00128G00250No description available.supercontig_128-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G13310No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00015G01700No description available.scaffold00015-View
CS00111G00440No description available.scaffold00111+View
CS00003G04320No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G04320No description available.scaffold_2-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G05530E3 ubiquitin-protein ligase MARCH3 (MARCH-III) (probable)scf0513158+View
FV5G13260E3 ubiquitin-protein ligase MARCH9 (MARCH-IX) (probable)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G11960No description available.Gm02-View
GM06G20860No description available.Gm06-View
GM01G05800No description available.Gm01+View
GM04G33580No description available.Gm04+View
GM20G04870No description available.Gm20+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G19310No description available.Chr08-View
GR13G08560No description available.Chr13-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G003670No description available.9-View
MD13G004690No description available.13+View
MD16G003810No description available.16+View
MD17G004060No description available.17-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03834G00030No description available.scaffold03834+View
ME08359G02330No description available.scaffold08359+View
ME12794G02190No description available.scaffold12794-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G010610RING-variant domain proteinchr7-View
MT5G040650RING/FYVE/PHD zinc finger proteinchr5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G28620No description available.scaffold_1-View
PPE_005G19850No description available.scaffold_5-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29813G00390No description available.29813-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G116030E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-typech03+View
SL05G007660E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-typech05-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G029490E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-typechr03+View
ST05G010200E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-typechr05+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G09030No description available.scaffold_3-View
TC0002G34440No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G12610similar to AT1G14260|zinc finger (C3HC4-type RING finger) family proteinch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G03680name=GSVIVG01008001001;chr17-View


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Gene id
Species
Description
Chromosome
Strand