Expansion plot
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Synteny plot
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Functional clusters
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BLAST
WorkbenchAnchorpoints
- Gene id
- AT5G62410
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT3G47460 | ATSMC2; FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: chromosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 105566 Blast hits to 56901 proteins in 3202 species: Archae - 1526; Bacteria - 19204; Metazoa - 44960; Fungi - 8478; Plants - 5252; Viruses - 457; Other Eukaryotes - 25689 (source: NCBI BLink). Structural maintenance of chromosomes (SMC) family protein member of SMC subfamily | 3 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL8G28740 | No description available. | scaffold_8 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR06G28920 | No description available. | A06 | + | View |
| BR06G17880 | No description available. | A06 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL05G08300 | No description available. | Chr5 | - | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00006G09180 | No description available. | CM3.5_scaffold00006 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_005G12710 | No description available. | scaffold_5 | + | View |
| CRU_008G22470 | No description available. | scaffold_8 | + | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0001G24670 | No description available. | scaffold_1 | + | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR03G11340 | No description available. | Chr03 | + | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD01G017050 | No description available. | 1 | - | View |
| MD07G016610 | No description available. | 7 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME06701G00440 | No description available. | scaffold06701 | - | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_002G26510 | No description available. | scaffold_2 | - | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC30147G01860 | No description available. | 30147 | + | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP2G25590 | similar to AT5G62410|SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) | ch2-4 | + | View |
| TP5G14420 | similar to AT3G47460|ATSMC2 | ch5-1 | - | View |