Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AT5G11190
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT1G15360 | Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2. Integrase-type DNA-binding superfamily protein SHINE 1 (SHN1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 23; Plants - 5843; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink). | 1 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL1G16200 | No description available. | scaffold_1 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR06G10760 | No description available. | A06 | + | View |
| BR10G22510 | No description available. | A10 | - | View |
| BR08G27110 | No description available. | A08 | - | View |
| BR09G47630 | No description available. | A09 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL05G18060 | No description available. | Chr5 | + | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM01596G04140 | No description available. | CM3.5_scaffold01596 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_001G14460 | No description available. | scaffold_1 | + | View |
| CRU_006G09420 | No description available. | scaffold_6 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM08G22590 | No description available. | Gm08 | - | View |
| GM07G03500 | No description available. | Gm07 | + | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR04G29260 | No description available. | Chr04 | - | View |
| GR10G11480 | No description available. | Chr10 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD15G006310 | No description available. | 15 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME00847G01560 | No description available. | scaffold00847 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP2G22160 | similar to AT5G25390|SHN2 (shine2) | ch2-4 | - | View |
| TP1G13690 | similar to AT1G15360|SHN1 (SHINE 1) | ch1-1 | + | View |