PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AT3G23830
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G13850	glycine-rich RNA-binding protein 2 (GR-RBP2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4 (TAIR:AT3G23830.2); Has 1220 Blast hits to 1220 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. glycine-rich RNA-binding protein 2	4	+	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G30730	No description available.	scaffold_7	-	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV3G10970	No description available.	Bvchr3.sca012	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL06G07040	No description available.	Chr6	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00157G00500	No description available.	supercontig_157	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_003G23110	No description available.	scaffold_3	-	View
CRU_007G27390	No description available.	scaffold_7	-	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00202G00110	No description available.	scaffold00202	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0008G01260	No description available.	scaffold_8	+	View
EG0008G00240	No description available.	scaffold_8	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV4G17100	Glycine-rich RNA-binding protein 2, mitochondrial (AtGRP2), Precursor (similar to)	LG4	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM11G36580	No description available.	Gm11	+	View
GM18G00480	No description available.	Gm18	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR05G02810	No description available.	Chr05	-	View
GR11G15330	No description available.	Chr11	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME03332G00930	No description available.	scaffold03332	-	View
ME02421G00820	No description available.	scaffold02421	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT3G084040	RNA-binding (RRM/RBD/RNP motif) family protein	chr3	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_001G15830	No description available.	scaffold_1	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT17G05900	No description available.	Chr17	+	View
PT01G31980	No description available.	Chr01	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL05G053780	RNA binding protein-like protein (AHRD V1 ***- Q3HVL3_SOLTU)%3B contains Interpro domain(s) IPR015465 RNA recognition motif%2C glycine rich protein	ch05	+	View
SL09G092320	RNA binding protein-like protein (AHRD V1 **** Q3HVL3_SOLTU)%3B contains Interpro domain(s) IPR015465 RNA recognition motif%2C glycine rich protein	ch09	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST09G028850	RNA-binding motif, single-stranded-interacting protein 1 (AHRD V1 -* RBMS1_MOUSE); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein	chr09	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0004G20060	No description available.	scaffold_4	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G11680	similar to AT4G13850\|GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	ch7-4	+	View
TP3G21550	similar to AT3G23830\|GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	ch3-2	-	View