Gene: AT3G23830 (Arabidopsis thaliana)

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Gene Identifier
AT3G23830
Transcript Identifier
AT3G23830.1
Gene Type
Coding gene
Location
3 : 8606762-8607677 : negative

Family

Gene family
HOM03D000057
(1388 genes in 31 species)
specific family
Subfamily
ORTHO03D004594
(35 genes in 26 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
glycine-rich RNA-binding protein 4
Curated Summary
encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.
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Identifiers

Identifier Name
aliasglycine-rich RNA-binding protein 4
aliasGRP4
aliasAtGRP4
aliasGR-RBP4
uniprotQ9LIS2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006970IMPGene Ontologyresponse to osmotic stress1
GO:0009409IEPUniProtresponse to cold1 2 3 4 5 6 7 8
GO:0009414IEPUniProtresponse to water deprivation1 2 3 4 5 6 7 8
GO:0009651IMPUniProtresponse to salt stress1 2 3 4 5 6 7 8
GO:0006364RCAGene OntologyrRNA processing1
GO:0009664RCAGene Ontologyplant-type cell wall organization1
GO:0042545RCAGene Ontologycell wall modification1
GO:0031564ISOPLAZA Tree-based Orthologytranscription antiterminationAT4G13850
GO:0009845ISOPLAZA Tree-based Orthologyseed germinationAT4G13850
GO:0009631ISOPLAZA Tree-based Orthologycold acclimationAT4G13850

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723IDA, ISS, UniProtRNA binding1 2 3 4 5 6 7 8 9
GO:0003690IDAUniProtdouble-stranded DNA binding1 2 3 4 5 6 7 8
GO:0003697IDAUniProtsingle-stranded DNA binding1 2 3 4 5 6 7 8
GO:0000166IEAUniProtnucleotide binding1 2 3 4 5 6 7
GO:0003676IEAInterPronucleic acid binding
GO:0005507ISOPLAZA Tree-based Orthologycopper ion bindingAT4G13850
GO:0001072ISOPLAZA Tree-based OrthologyRNA binding transcription antitermination factor activityAT4G13850
GO:0005524ISOPLAZA Tree-based OrthologyATP bindingAT4G13850
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000057
GO:0005488IEAPLAZA HomologybindingHOM03D000057
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000057
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000057
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000057

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739IDAUniProtmitochondrion1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012677Nucleotide-binding, alpha-beta plait
IPR000504RNA recognition motif domain

Mapman id Description
27.4RNA.RNA binding
No SignalP domains detected for this gene.