Anchorpoints
- Gene id
- AT2G39700
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G55500 | expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A16 (EXPA16); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2167 Blast hits to 2164 proteins in 159 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 38; Plants - 2087; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). expansin A16 | 3 | - | View |
AT2G28950 | Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A6 (EXPA6); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2139 Blast hits to 2136 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 24; Plants - 2081; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). expansin A6 | 2 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL5G25610 | No description available. | scaffold_5 | - | View |
AL6G01440 | No description available. | scaffold_6 | + | View |
AL4G26190 | No description available. | scaffold_4 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00012G01840 | No description available. | scaffold00012 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR04G03930 | No description available. | A04 | + | View |
BR05G06140 | No description available. | A05 | + | View |
BR10G28670 | No description available. | A10 | - | View |
BR09G36380 | No description available. | A09 | - | View |
BR04G23570 | No description available. | A04 | - | View |
BR03G19900 | No description available. | A03 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV2G05410 | No description available. | Bvchr2.sca001 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL09G20060 | No description available. | Chr9 | + | View |
CL07G03430 | No description available. | Chr7 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00048G01530 | No description available. | CM3.5_scaffold00048 | + | View |
CM00063G00730 | No description available. | CM3.5_scaffold00063 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00001G04090 | No description available. | supercontig_1 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G21030 | No description available. | scaffold_4 | - | View |
CRU_005G20900 | No description available. | scaffold_5 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00021G01840 | No description available. | scaffold00021 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0007G23290 | No description available. | scaffold_7 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV7G26090 | Expansin-A4 (AtEXPA4), Precursor (putative) | LG7 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM11G34040 | No description available. | Gm11 | - | View |
GM02G41590 | No description available. | Gm02 | - | View |
GM13G41160 | No description available. | Gm13 | - | View |
GM14G07360 | No description available. | Gm14 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR12G10440 | No description available. | Chr12 | - | View |
GR01G11110 | No description available. | Chr01 | - | View |
GR11G26600 | No description available. | Chr11 | - | View |
GR02G25740 | No description available. | Chr02 | + | View |
GR09G09880 | No description available. | Chr09 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD01G012420 | No description available. | 1 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME08265G02170 | No description available. | scaffold08265 | - | View |
ME06705G00090 | No description available. | scaffold06705 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G079950 | expansin A10 | chr5 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_002G22810 | No description available. | scaffold_2 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT08G05710 | No description available. | Chr08 | - | View |
PT10G20250 | No description available. | Chr10 | + | View |
PT06G08610 | No description available. | Chr06 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL09G010860 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch09 | - | View |
SL10G084780 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminal | ch10 | - | View |
SL06G076220 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR002963 Expansin | ch06 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G024150 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal | chr10 | + | View |
ST06G032040 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansin | chr06 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0010G03380 | No description available. | scaffold_10r | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G06980 | similar to AT3G55500|ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) | ch5-1 | + | View |
TP4G21950 | similar to AT2G39700|ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) | ch4-6 | - | View |