Anchorpoints
- Gene id
- AT2G28950
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G39700 | expansin A4 expansin A4 (EXPA4); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2158 Blast hits to 2155 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 41; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | 2 | - | View |
AT2G37640 | EXP3; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2147 Blast hits to 2144 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 34; Plants - 2079; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). Barwin-like endoglucanases superfamily protein member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | 2 | - | View |
AT3G55500 | expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A16 (EXPA16); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2167 Blast hits to 2164 proteins in 159 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 38; Plants - 2087; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). expansin A16 | 3 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL4G13460 | No description available. | scaffold_4 | - | View |
AL5G25610 | No description available. | scaffold_5 | - | View |
AL6G01440 | No description available. | scaffold_6 | + | View |
AL4G26190 | No description available. | scaffold_4 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G36380 | No description available. | A09 | - | View |
BR04G16930 | No description available. | A04 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV7G06460 | No description available. | Bvchr7.sca021 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL03G01470 | No description available. | Chr3 | + | View |
CL02G20290 | No description available. | Chr2 | + | View |
CL04G08020 | No description available. | Chr4 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00002G00700 | No description available. | CM3.5_scaffold00002 | - | View |
CM00084G00680 | No description available. | CM3.5_scaffold00084 | + | View |
CM00044G01630 | No description available. | CM3.5_scaffold00044 | + | View |
CM00063G00730 | No description available. | CM3.5_scaffold00063 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00081G01390 | No description available. | supercontig_81 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G09710 | No description available. | scaffold_4 | - | View |
CRU_006G01070 | No description available. | scaffold_6 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00014G00340 | No description available. | scaffold00014 | + | View |
CS00189G00060 | No description available. | scaffold00189 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0002G18820 | No description available. | scaffold_2 | + | View |
EG0001G10310 | No description available. | scaffold_1 | - | View |
EG0007G23290 | No description available. | scaffold_7 | - | View |
EG0010G17700 | No description available. | scaffold_10 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV7G26090 | Expansin-A4 (AtEXPA4), Precursor (putative) | LG7 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM15G04240 | No description available. | Gm15 | + | View |
GM11G14800 | No description available. | Gm11 | + | View |
GM12G06730 | No description available. | Gm12 | + | View |
GM13G41160 | No description available. | Gm13 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR01G11110 | No description available. | Chr01 | - | View |
GR07G37630 | No description available. | Chr07 | - | View |
GR02G25740 | No description available. | Chr02 | + | View |
GR06G17240 | No description available. | Chr06 | + | View |
GR09G09880 | No description available. | Chr09 | + | View |
GR03G13100 | No description available. | Chr03 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD01G012420 | No description available. | 1 | - | View |
MD12G013180 | No description available. | 12 | - | View |
MD03G006640 | No description available. | 3 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME06916G00600 | No description available. | scaffold06916 | + | View |
ME08265G02170 | No description available. | scaffold08265 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT4G063975 | expansin A10 | chr4 | - | View |
MT2G097030 | expansin A10 | chr2 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G07410 | No description available. | scaffold_6 | + | View |
PPE_006G26410 | No description available. | scaffold_6 | - | View |
PPE_002G22810 | No description available. | scaffold_2 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G24090 | No description available. | Chr01 | - | View |
PT08G05710 | No description available. | Chr08 | - | View |
PT09G03180 | No description available. | Chr09 | - | View |
PT10G20250 | No description available. | Chr10 | + | View |
PT06G08610 | No description available. | Chr06 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL09G010860 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch09 | - | View |
SL10G084780 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminal | ch10 | - | View |
SL06G076220 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR002963 Expansin | ch06 | - | View |
SL06G005560 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch06 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G024150 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal | chr10 | + | View |
ST10G028230 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr10 | + | View |
ST09G009120 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr09 | + | View |
ST06G032040 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansin | chr06 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0010G03380 | No description available. | scaffold_10r | - | View |
TC0005G03690 | No description available. | scaffold_5 | + | View |
TC0009G31460 | No description available. | scaffold_9 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP4G11760 | similar to AT2G28950|ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) | ch4-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV08G14490 | name=GSVIVG01034162001; | chr8 | - | View |
VV06G03450 | name=GSVIVG01024946001; | chr6 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM01G57960 | No description available. | 1 | - | View |