Anchorpoints

Gene id
AT2G28950
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G39700expansin A4 expansin A4 (EXPA4); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2158 Blast hits to 2155 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 41; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.2-View
AT2G37640EXP3; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2147 Blast hits to 2144 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 34; Plants - 2079; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). Barwin-like endoglucanases superfamily protein member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.2-View
AT3G55500expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A16 (EXPA16); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2167 Blast hits to 2164 proteins in 159 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 38; Plants - 2087; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). expansin A163-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G13460No description available.scaffold_4-View
AL5G25610No description available.scaffold_5-View
AL6G01440No description available.scaffold_6+View
AL4G26190No description available.scaffold_4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G36380No description available.A09-View
BR04G16930No description available.A04-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV7G06460No description available.Bvchr7.sca021+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G01470No description available.Chr3+View
CL02G20290No description available.Chr2+View
CL04G08020No description available.Chr4+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00002G00700No description available.CM3.5_scaffold00002-View
CM00084G00680No description available.CM3.5_scaffold00084+View
CM00044G01630No description available.CM3.5_scaffold00044+View
CM00063G00730No description available.CM3.5_scaffold00063-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00081G01390No description available.supercontig_81+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G09710No description available.scaffold_4-View
CRU_006G01070No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00014G00340No description available.scaffold00014+View
CS00189G00060No description available.scaffold00189-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G18820No description available.scaffold_2+View
EG0001G10310No description available.scaffold_1-View
EG0007G23290No description available.scaffold_7-View
EG0010G17700No description available.scaffold_10+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G26090Expansin-A4 (AtEXPA4), Precursor (putative)LG7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM15G04240No description available.Gm15+View
GM11G14800No description available.Gm11+View
GM12G06730No description available.Gm12+View
GM13G41160No description available.Gm13-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G11110No description available.Chr01-View
GR07G37630No description available.Chr07-View
GR02G25740No description available.Chr02+View
GR06G17240No description available.Chr06+View
GR09G09880No description available.Chr09+View
GR03G13100No description available.Chr03+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD01G012420No description available.1-View
MD12G013180No description available.12-View
MD03G006640No description available.3+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06916G00600No description available.scaffold06916+View
ME08265G02170No description available.scaffold08265-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G063975expansin A10chr4-View
MT2G097030expansin A10chr2-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G07410No description available.scaffold_6+View
PPE_006G26410No description available.scaffold_6-View
PPE_002G22810No description available.scaffold_2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G24090No description available.Chr01-View
PT08G05710No description available.Chr08-View
PT09G03180No description available.Chr09-View
PT10G20250No description available.Chr10+View
PT06G08610No description available.Chr06-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL09G010860Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch09-View
SL10G084780Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminalch10-View
SL06G076220Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR002963 Expansinch06-View
SL06G005560Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch06-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G024150Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminalchr10+View
ST10G028230Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr10+View
ST09G009120Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr09+View
ST06G032040Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansinchr06-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0010G03380No description available.scaffold_10r-View
TC0005G03690No description available.scaffold_5+View
TC0009G31460No description available.scaffold_9+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G11760similar to AT2G28950|ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)ch4-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G14490name=GSVIVG01034162001;chr8-View
VV06G03450name=GSVIVG01024946001;chr6-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G57960No description available.1-View


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Gene id
Species
Description
Chromosome
Strand