Anchorpoints
- Gene id
- AT1G15360
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT4G13620 | Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5584 Blast hits to 5564 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 5562; Viruses - 6; Other Eukaryotes - 12 (source: NCBI BLink). encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein | 4 | + | View |
AT1G78080 | Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink). related to AP2 4 | 1 | + | View |
AT5G11190 | shine3 (SHN3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: anther dehiscence zone, fruit dehiscence zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | 5 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G27060 | No description available. | scaffold_2 | + | View |
AL1G16200 | No description available. | scaffold_1 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G22330 | No description available. | A09 | - | View |
BR06G10760 | No description available. | A06 | + | View |
BR08G27110 | No description available. | A08 | - | View |
BR09G47630 | No description available. | A09 | - | View |
BR02G24620 | No description available. | A02 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV9G15660 | No description available. | Bvchr9.sca026 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G26690 | No description available. | Chr5 | - | View |
CL10G09360 | No description available. | Chr10 | + | View |
CL06G11790 | No description available. | Chr6 | - | View |
CL05G18060 | No description available. | Chr5 | + | View |
CL06G04700 | No description available. | Chr6 | - | View |
CL07G13470 | No description available. | Chr7 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM01596G04140 | No description available. | CM3.5_scaffold01596 | - | View |
CM00012G03730 | No description available. | CM3.5_scaffold00012 | + | View |
CM00031G02990 | No description available. | CM3.5_scaffold00031 | + | View |
CM00031G04180 | No description available. | CM3.5_scaffold00031 | - | View |
CM00047G01790 | No description available. | CM3.5_scaffold00047 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00010G02320 | No description available. | supercontig_10 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G14460 | No description available. | scaffold_1 | + | View |
CRU_006G09420 | No description available. | scaffold_6 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00001G07160 | No description available. | scaffold00001 | - | View |
CS00016G00640 | No description available. | scaffold00016 | + | View |
CS00051G00590 | No description available. | scaffold00051 | - | View |
CS00005G02650 | No description available. | scaffold00005 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0008G09340 | No description available. | scaffold_8 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM04G07140 | No description available. | Gm04 | + | View |
GM04G19650 | No description available. | Gm04 | - | View |
GM19G40070 | No description available. | Gm19 | + | View |
GM15G01140 | No description available. | Gm15 | + | View |
GM17G31900 | No description available. | Gm17 | - | View |
GM08G22590 | No description available. | Gm08 | - | View |
GM07G03500 | No description available. | Gm07 | + | View |
GM06G29110 | No description available. | Gm06 | + | View |
GM06G07240 | No description available. | Gm06 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR01G04230 | No description available. | Chr01 | - | View |
GR07G35940 | No description available. | Chr07 | - | View |
GR11G08290 | No description available. | Chr11 | - | View |
GR09G01750 | No description available. | Chr09 | + | View |
GR01G03320 | No description available. | Chr01 | - | View |
GR10G11480 | No description available. | Chr10 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ4G031170 | No description available. | chr4 | - | View |
LJ2G025150 | No description available. | chr2 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD16G011840 | No description available. | 16 | - | View |
MD06G008520 | No description available. | 6 | - | View |
MD08G006640 | No description available. | 8 | - | View |
MD13G014830 | No description available. | 13 | - | View |
MD03G024790 | No description available. | 3 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME01551G03840 | No description available. | scaffold01551 | + | View |
ME04269G00290 | No description available. | scaffold04269 | - | View |
ME04151G00370 | No description available. | scaffold04151 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT2G019750 | AP2 domain class transcription factor | chr2 | - | View |
MT2G103700 | ethylene response factor | chr2 | - | View |
MT4G010640 | ethylene response factor | chr4 | - | View |
MT1G012470 | ethylene response factor | chr1 | - | View |
MT5G032820 | AP2 domain class transcription factor | chr5 | + | View |
MT1G087920 | ethylene response factor | chr1 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS06G40150 | AP2 domain containing protein, expressed | 6 | - | View |
OS03G22170 | AP2 domain containing protein, expressed | 3 | + | View |
OS07G47790 | AP2 domain containing protein, expressed | 7 | - | View |
OS02G10760 | AP2 domain containing protein, expressed | 2 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_003G07150 | No description available. | scaffold_3 | - | View |
PPE_007G02930 | No description available. | scaffold_7 | - | View |
PPE_001G25610 | No description available. | scaffold_1 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT06G25380 | No description available. | Chr06 | - | View |
PT13G04520 | No description available. | Chr13 | + | View |
PT10G04660 | No description available. | Chr10 | - | View |
PT03G03300 | No description available. | Chr03 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29841G01070 | No description available. | 29841 | - | View |
RC29726G02030 | No description available. | 29726 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL09G075420 | Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding IPR001711 Phospholipase C%2C phosphatidylinositol-specific%2C Y domain | ch09 | + | View |
SL03G116610 | Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch03 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST12G014260 | Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr12 | + | View |
ST10G022030 | Ethylene-responsive transcription factor 10 (AHRD V1 ***- ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr10 | + | View |
ST03G030060 | Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr03 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0009G02460 | No description available. | scaffold_9 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP2G22160 | similar to AT5G25390|SHN2 (shine2) | ch2-4 | - | View |
TP1G13690 | similar to AT1G15360|SHN1 (SHINE 1) | ch1-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV11G06490 | name=GSVIVG01015540001; | chr11 | - | View |
VV09G06840 | name=GSVIVG01017315001; | chr9 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM04G38470 | No description available. | 4 | + | View |
ZM05G34700 | No description available. | 5 | - | View |
ZM06G14070 | No description available. | 6 | + | View |
ZM05G22930 | ethylene responsive element | 5 | - | View |
ZM03G29550 | No description available. | 3 | - | View |