Anchorpoints

Gene id
AT1G15360
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G13620Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5584 Blast hits to 5564 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 5562; Viruses - 6; Other Eukaryotes - 12 (source: NCBI BLink). encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein4+View
AT1G78080Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink). related to AP2 41+View
AT5G11190shine3 (SHN3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: anther dehiscence zone, fruit dehiscence zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.5+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G27060No description available.scaffold_2+View
AL1G16200No description available.scaffold_1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G22330No description available.A09-View
BR06G10760No description available.A06+View
BR08G27110No description available.A08-View
BR09G47630No description available.A09-View
BR02G24620No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G15660No description available.Bvchr9.sca026+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G26690No description available.Chr5-View
CL10G09360No description available.Chr10+View
CL06G11790No description available.Chr6-View
CL05G18060No description available.Chr5+View
CL06G04700No description available.Chr6-View
CL07G13470No description available.Chr7-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM01596G04140No description available.CM3.5_scaffold01596-View
CM00012G03730No description available.CM3.5_scaffold00012+View
CM00031G02990No description available.CM3.5_scaffold00031+View
CM00031G04180No description available.CM3.5_scaffold00031-View
CM00047G01790No description available.CM3.5_scaffold00047-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00010G02320No description available.supercontig_10-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G14460No description available.scaffold_1+View
CRU_006G09420No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00001G07160No description available.scaffold00001-View
CS00016G00640No description available.scaffold00016+View
CS00051G00590No description available.scaffold00051-View
CS00005G02650No description available.scaffold00005+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G09340No description available.scaffold_8-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G07140No description available.Gm04+View
GM04G19650No description available.Gm04-View
GM19G40070No description available.Gm19+View
GM15G01140No description available.Gm15+View
GM17G31900No description available.Gm17-View
GM08G22590No description available.Gm08-View
GM07G03500No description available.Gm07+View
GM06G29110No description available.Gm06+View
GM06G07240No description available.Gm06+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G04230No description available.Chr01-View
GR07G35940No description available.Chr07-View
GR11G08290No description available.Chr11-View
GR09G01750No description available.Chr09+View
GR01G03320No description available.Chr01-View
GR10G11480No description available.Chr10-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G031170No description available.chr4-View
LJ2G025150No description available.chr2+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD16G011840No description available.16-View
MD06G008520No description available.6-View
MD08G006640No description available.8-View
MD13G014830No description available.13-View
MD03G024790No description available.3+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME01551G03840No description available.scaffold01551+View
ME04269G00290No description available.scaffold04269-View
ME04151G00370No description available.scaffold04151+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G019750AP2 domain class transcription factorchr2-View
MT2G103700ethylene response factorchr2-View
MT4G010640ethylene response factorchr4-View
MT1G012470ethylene response factorchr1-View
MT5G032820AP2 domain class transcription factorchr5+View
MT1G087920ethylene response factorchr1+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G40150AP2 domain containing protein, expressed6-View
OS03G22170AP2 domain containing protein, expressed3+View
OS07G47790AP2 domain containing protein, expressed7-View
OS02G10760AP2 domain containing protein, expressed2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G07150No description available.scaffold_3-View
PPE_007G02930No description available.scaffold_7-View
PPE_001G25610No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G25380No description available.Chr06-View
PT13G04520No description available.Chr13+View
PT10G04660No description available.Chr10-View
PT03G03300No description available.Chr03+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29841G01070No description available.29841-View
RC29726G02030No description available.29726+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL09G075420Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding IPR001711 Phospholipase C%2C phosphatidylinositol-specific%2C Y domainch09+View
SL03G116610Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch03-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST12G014260Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr12+View
ST10G022030Ethylene-responsive transcription factor 10 (AHRD V1 ***- ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr10+View
ST03G030060Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr03-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G02460No description available.scaffold_9+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G22160similar to AT5G25390|SHN2 (shine2)ch2-4-View
TP1G13690similar to AT1G15360|SHN1 (SHINE 1)ch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV11G06490name=GSVIVG01015540001;chr11-View
VV09G06840name=GSVIVG01017315001;chr9-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM04G38470No description available.4+View
ZM05G34700No description available.5-View
ZM06G14070No description available.6+View
ZM05G22930ethylene responsive element5-View
ZM03G29550No description available.3-View


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Gene id
Species
Description
Chromosome
Strand