Anchorpoints

Gene id
AL4G34330
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL5G32390No description available.scaffold_5+View
AL2G24420No description available.scaffold_2+View
AL7G18440No description available.scaffold_7-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G61630CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. cytokinin response factor 6 cytokinin response factor 6 (CRF6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 5 (TAIR:AT2G46310.1); Has 5693 Blast hits to 5625 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5682; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).3+View
AT1G75490Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18450.1); Has 5736 Blast hits to 5602 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5714; Viruses - 6; Other Eukaryotes - 14 (source: NCBI BLink).1+View
AT4G23750cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 5899 Blast hits to 5717 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 5881; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). cytokinin response factor 2 encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.4+View
AT2G46310CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. cytokinin response factor 5 (CRF5); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 6 (TAIR:AT3G61630.1); Has 5622 Blast hits to 5574 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5609; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink). cytokinin response factor 52+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G47480No description available.A03+View
BR05G05670No description available.A05+View
BR07G17030No description available.A07+View
BR01G13750No description available.A01+View
BR05G01400No description available.A05-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G05590No description available.Bvchr1.sca001-View
BV1G08400No description available.Bvchr1.sca001-View
BV3G02670No description available.Bvchr3.sca003-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G19740No description available.Chr5-View
CL05G09840No description available.Chr5+View
CL01G01790No description available.Chr1+View
CL01G00490No description available.Chr1-View
CL05G01330No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00006G01390No description available.CM3.5_scaffold00006+View
CM00005G08520No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00003G00430No description available.supercontig_3+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G27960No description available.scaffold_4+View
CRU_007G16470No description available.scaffold_7-View
CRU_002G21080No description available.scaffold_2+View
CRU_005G26900No description available.scaffold_5+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00009G01860No description available.scaffold00009+View
CS00001G03980No description available.scaffold00001+View
CS00002G04890No description available.scaffold00002+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G13020No description available.scaffold_6+View
EG0004G14240No description available.scaffold_4-View
EG0011G02890No description available.scaffold_11+View
EG0004G19360No description available.scaffold_4+View
EG0005G07090No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G06350Ethylene-responsive transcription factor CRF5 (probable)LG7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM05G37120No description available.Gm05-View
GM19G44240No description available.Gm19+View
GM04G41740No description available.Gm04-View
GM06G13040No description available.Gm06+View
GM06G03110No description available.Gm06-View
GM03G41640No description available.Gm03+View
GM08G02460No description available.Gm08+View
GM01G43350No description available.Gm01+View
GM04G03070No description available.Gm04-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR07G10560No description available.Chr07+View
GR09G19780No description available.Chr09-View
GR03G08220No description available.Chr03-View
GR08G12340No description available.Chr08+View
GR08G27120No description available.Chr08-View
GR01G15690No description available.Chr01-View
GR08G25230No description available.Chr08+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD12G015290No description available.12-View
MD07G019540No description available.7+View
MD01G021330No description available.1+View
MD01G006240No description available.1+View
MD08G001410No description available.8-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME02658G00570No description available.scaffold02658-View
ME05280G01070No description available.scaffold05280-View
ME03581G01030No description available.scaffold03581-View
ME00341G00280No description available.scaffold00341-View
ME06089G00350No description available.scaffold06089-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G023170AP2 domain class transcription factorchr1+View
MT5G009410AP2 domain class transcription factorchr5+View
MT3G112440dehydration-responsive element-binding proteinchr3+View
MT8G099215ethylene response factorchr8+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G38030No description available.scaffold_1-View
PPE_002G17670No description available.scaffold_2+View
PPE_005G12270No description available.scaffold_5+View
PPE_002G29340No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G16740No description available.Chr02+View
PT03G13630No description available.Chr03+View
PT02G02940No description available.Chr02-View
PT05G23330No description available.Chr05+View
PT14G09450No description available.Chr14+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04700No description available.30170+View
RC30190G05000No description available.30190+View
RC30169G03130No description available.30169-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G081960Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_NICSY)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch08+View
SL04G080910Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch04+View
SL01G095500Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G034300Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr04+View
ST03G013720Ethylene-responsive transcription factor 2 (AHRD V1 *-*- ERF2_TOBAC); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr03-View
ST08G009520Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr08+View
ST01G032950Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0008G03410No description available.scaffold_8+View
TC0003G28720No description available.scaffold_3+View
TC0001G34500No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G21700similar to AT4G23750|CRF2 (CYTOKININ RESPONSE FACTOR 2)ch7-4+View
TP2G00350similar to AT1G64380|AP2 domain-containing transcription factor, putativech2-1+View
TP5G01780similar to AT3G61630|CRF6 (CYTOKININ RESPONSE FACTOR 6)ch5-1-View
TP5G30620similar to AT1G75490|DNA binding / transcription factorch5-7+View
TP4G28350similar to AT2G46310|CRF5 (CYTOKININ RESPONSE FACTOR 5)ch4-6+View
TP6G06270similar to AT4G11140|CRF1 (CYTOKININ RESPONSE FACTOR 1)ch6-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G09710name=GSVIVG01009801001;chr18+View


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Gene id
Species
Description
Chromosome
Strand