Anchorpoints

Gene id
AL3G38180
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G22020No description available.scaffold_1+View
AL2G25320No description available.scaffold_2+View
AL7G05430No description available.scaffold_7+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G17450Encodes a putative RING-H2 finger protein RHA3a. RING-H2 finger A3A RING-H2 finger A3A (RHA3A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A3B (TAIR:AT4G35480.1); Has 9845 Blast hits to 9818 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2501; Fungi - 735; Plants - 5213; Viruses - 41; Other Eukaryotes - 1355 (source: NCBI BLink).2-View
AT1G20823RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink). RING/U-box superfamily protein1+View
AT1G76410ATL8; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G20823.1); Has 9001 Blast hits to 8977 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2299; Fungi - 634; Plants - 4930; Viruses - 29; Other Eukaryotes - 1109 (source: NCBI BLink). RING/U-box superfamily protein1+View
AT4G35480Encodes a putative RING-H2 finger protein RHA3b. RING-H2 finger A3B RING-H2 finger A3B (RHA3B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A3A (TAIR:AT2G17450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G02840No description available.A01+View
BR03G54760No description available.A03-View
BR10G17200No description available.A10+View
BR06G24570No description available.A06+View
BR06G15020No description available.A06+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G02040No description available.Chr10+View
CL02G03120No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00021G00150No description available.CM3.5_scaffold00021-View
CM00020G00240No description available.CM3.5_scaffold00020-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G19450No description available.scaffold_1+View
CRU_007G04500No description available.scaffold_7-View
CRU_003G30330No description available.scaffold_3-View
CRU_002G22010No description available.scaffold_2+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G07000No description available.scaffold00002+View
CS00023G02240No description available.scaffold00023+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G18270No description available.scaffold_9-View
EG0006G14750No description available.scaffold_6+View
EG0009G18620No description available.scaffold_9-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G11920RING-H2 finger protein ATL1B (similar to)LG1-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM09G32670No description available.Gm09+View
GM01G36160No description available.Gm01-View
GM06G01770No description available.Gm06-View
GM11G09280No description available.Gm11+View
GM16G21550No description available.Gm16+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD02G009230No description available.2-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07520G03610No description available.scaffold07520+View
ME06512G02100No description available.scaffold06512+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G20630No description available.scaffold_7+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G20960No description available.Chr04+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G07220No description available.30170+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G082420Ring finger protein (AHRD V1 *-*- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech02-View
SL04G082690Ring finger protein (AHRD V1 *-*- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST12G028020Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr12+View
ST04G036170Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G00280No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G30810similar to AT2G17450|RHA3Ach3-6-View
TP5G31570similar to AT1G76410|ATL8ch5-7+View
TP1G18520similar to AT1G20823|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP7G33260similar to AT4G35480|RHA3Bch7-6-View


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Gene id
Species
Description
Chromosome
Strand