Anchorpoints
- Gene id
- AL3G38180
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G22020 | No description available. | scaffold_1 | + | View |
AL2G25320 | No description available. | scaffold_2 | + | View |
AL7G05430 | No description available. | scaffold_7 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G17450 | Encodes a putative RING-H2 finger protein RHA3a. RING-H2 finger A3A RING-H2 finger A3A (RHA3A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A3B (TAIR:AT4G35480.1); Has 9845 Blast hits to 9818 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2501; Fungi - 735; Plants - 5213; Viruses - 41; Other Eukaryotes - 1355 (source: NCBI BLink). | 2 | - | View |
AT1G20823 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink). RING/U-box superfamily protein | 1 | + | View |
AT1G76410 | ATL8; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G20823.1); Has 9001 Blast hits to 8977 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2299; Fungi - 634; Plants - 4930; Viruses - 29; Other Eukaryotes - 1109 (source: NCBI BLink). RING/U-box superfamily protein | 1 | + | View |
AT4G35480 | Encodes a putative RING-H2 finger protein RHA3b. RING-H2 finger A3B RING-H2 finger A3B (RHA3B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A3A (TAIR:AT2G17450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | 4 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR01G02840 | No description available. | A01 | + | View |
BR03G54760 | No description available. | A03 | - | View |
BR10G17200 | No description available. | A10 | + | View |
BR06G24570 | No description available. | A06 | + | View |
BR06G15020 | No description available. | A06 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL10G02040 | No description available. | Chr10 | + | View |
CL02G03120 | No description available. | Chr2 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00021G00150 | No description available. | CM3.5_scaffold00021 | - | View |
CM00020G00240 | No description available. | CM3.5_scaffold00020 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G19450 | No description available. | scaffold_1 | + | View |
CRU_007G04500 | No description available. | scaffold_7 | - | View |
CRU_003G30330 | No description available. | scaffold_3 | - | View |
CRU_002G22010 | No description available. | scaffold_2 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G07000 | No description available. | scaffold00002 | + | View |
CS00023G02240 | No description available. | scaffold00023 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G18270 | No description available. | scaffold_9 | - | View |
EG0006G14750 | No description available. | scaffold_6 | + | View |
EG0009G18620 | No description available. | scaffold_9 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV1G11920 | RING-H2 finger protein ATL1B (similar to) | LG1 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM09G32670 | No description available. | Gm09 | + | View |
GM01G36160 | No description available. | Gm01 | - | View |
GM06G01770 | No description available. | Gm06 | - | View |
GM11G09280 | No description available. | Gm11 | + | View |
GM16G21550 | No description available. | Gm16 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD02G009230 | No description available. | 2 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME07520G03610 | No description available. | scaffold07520 | + | View |
ME06512G02100 | No description available. | scaffold06512 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_007G20630 | No description available. | scaffold_7 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT04G20960 | No description available. | Chr04 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G07220 | No description available. | 30170 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G082420 | Ring finger protein (AHRD V1 *-*- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch02 | - | View |
SL04G082690 | Ring finger protein (AHRD V1 *-*- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch04 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST12G028020 | Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr12 | + | View |
ST04G036170 | Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G00280 | No description available. | scaffold_1 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP3G30810 | similar to AT2G17450|RHA3A | ch3-6 | - | View |
TP5G31570 | similar to AT1G76410|ATL8 | ch5-7 | + | View |
TP1G18520 | similar to AT1G20823|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
TP7G33260 | similar to AT4G35480|RHA3B | ch7-6 | - | View |