Anchorpoints

Gene id
AL3G21070
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G19510Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain HAT3.1; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: pathogenesis related homeodomain protein A (TAIR:AT4G29940.1); Has 21195 Blast hits to 13195 proteins in 937 species: Archae - 172; Bacteria - 5087; Metazoa - 6772; Fungi - 2621; Plants - 1255; Viruses - 207; Other Eukaryotes - 5081 (source: NCBI BLink). Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G30490No description available.A01+View
BR05G24120No description available.A05+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G11660No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00038G01930No description available.CM3.5_scaffold00038-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G18450No description available.scaffold_3-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM10G40641No description available.Gm10+View
GM20G26700No description available.Gm20-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G23430No description available.Chr05+View
GR12G14890No description available.Chr12+View
GR08G02150No description available.Chr08+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ5G036860No description available.chr5+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G107015homeobox KN domain proteinchr1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G15620No description available.scaffold_8-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G29840No description available.Chr01+View
PT09G09300No description available.Chr09+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G107410PHD-finger family homeodomain protein (Fragment) (AHRD V1 *--- Q8H990_ORYSJ)%3B contains Interpro domain(s) IPR019787 Zinc finger%2C PHD-fingerch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G044570PHD-finger family homeodomain protein (Fragment) (AHRD V1 *--- Q8H990_ORYSJ); contains Interpro domain(s) IPR019787 Zinc finger, PHD-fingerchr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G10710No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G17570similar to AT3G19510|HAT3.1ch3-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV03G10360name=GSVIVG01037894001;chr3-View


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Gene id
Species
Description
Chromosome
Strand