Anchorpoints

Gene id
AL3G16790
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G16170No description available.scaffold_1-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G15790methyl-CPG-binding domain 11 methyl-CPG-binding domain 11 (MBD11); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 10 (TAIR:AT1G15340.1); Has 9357 Blast hits to 6006 proteins in 613 species: Archae - 14; Bacteria - 964; Metazoa - 3510; Fungi - 943; Plants - 531; Viruses - 98; Other Eukaryotes - 3297 (source: NCBI BLink). Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.3+View
AT1G15340methyl-CPG-binding domain 10 (MBD10); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1); Has 137026 Blast hits to 72034 proteins in 3183 species: Archae - 674; Bacteria - 27556; Metazoa - 48373; Fungi - 14456; Plants - 6804; Viruses - 747; Other Eukaryotes - 38416 (source: NCBI BLink). Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. methyl-CPG-binding domain 101-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G33060No description available.A01-View
BR08G27130No description available.A08+View
BR09G47660No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV8G02480No description available.Bvchr8.sca018-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G02500No description available.Chr9+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00031G03550No description available.CM3.5_scaffold00031-View
CM00060G00620No description available.CM3.5_scaffold00060+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G14430No description available.scaffold_1-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G26000Nucleosome-binding protein 1 (NBP-45) (probable)LG6-View
FV1G05370Myb-like protein X (probable)LG1-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM13G44230No description available.Gm13+View
GM15G01040No description available.Gm15-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G06280No description available.Chr10-View
GR06G10110No description available.Chr06+View
GR11G08390No description available.Chr11+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD15G010490No description available.15-View
MD06G008640No description available.6+View
MD02G003010No description available.2-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04151G00290No description available.scaffold04151-View
ME12498G00250No description available.scaffold12498-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G010210methyl-CpG-binding domain proteinchr4-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G26260No description available.scaffold_7+View
PPE_003G07290No description available.scaffold_3+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G19240No description available.Chr01-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29841G01160No description available.29841+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G068140Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR)%3B contains Interpro domain(s) IPR001739 Methyl-CpG DNA bindingch06+View
SL03G116680Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR)%3B contains Interpro domain(s) IPR001739 Methyl-CpG DNA bindingch03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G030130Methyl-CpG binding domain containing protein expressed (AHRD V1 *-*- Q2QM23_ORYSJ); contains Interpro domain(s) IPR001739 Methyl-CpG DNA bindingchr03+View
ST06G023670Methyl-CpG binding domain containing protein expressed (AHRD V1 *-*- Q2QM23_ORYSJ); contains Interpro domain(s) IPR001739 Methyl-CpG DNA bindingchr06+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G02280No description available.scaffold_6+View
TC0009G12360No description available.scaffold_9+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G13660similar to AT1G15340|MBD10ch1-1-View
TP3G14110similar to AT3G15790|MBD11ch3-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV09G06960name=GSVIVG01017330001;chr9+View
VV11G06710name=GSVIVG01015565001;chr11-View


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Gene id
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Description
Chromosome
Strand