Anchorpoints
- Gene id
- AL3G16790
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G15790 | methyl-CPG-binding domain 11 methyl-CPG-binding domain 11 (MBD11); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 10 (TAIR:AT1G15340.1); Has 9357 Blast hits to 6006 proteins in 613 species: Archae - 14; Bacteria - 964; Metazoa - 3510; Fungi - 943; Plants - 531; Viruses - 98; Other Eukaryotes - 3297 (source: NCBI BLink). Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | 3 | + | View |
AT1G15340 | methyl-CPG-binding domain 10 (MBD10); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1); Has 137026 Blast hits to 72034 proteins in 3183 species: Archae - 674; Bacteria - 27556; Metazoa - 48373; Fungi - 14456; Plants - 6804; Viruses - 747; Other Eukaryotes - 38416 (source: NCBI BLink). Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. methyl-CPG-binding domain 10 | 1 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR01G33060 | No description available. | A01 | - | View |
BR08G27130 | No description available. | A08 | + | View |
BR09G47660 | No description available. | A09 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV8G02480 | No description available. | Bvchr8.sca018 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL09G02500 | No description available. | Chr9 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00031G03550 | No description available. | CM3.5_scaffold00031 | - | View |
CM00060G00620 | No description available. | CM3.5_scaffold00060 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G14430 | No description available. | scaffold_1 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV6G26000 | Nucleosome-binding protein 1 (NBP-45) (probable) | LG6 | - | View |
FV1G05370 | Myb-like protein X (probable) | LG1 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM13G44230 | No description available. | Gm13 | + | View |
GM15G01040 | No description available. | Gm15 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR10G06280 | No description available. | Chr10 | - | View |
GR06G10110 | No description available. | Chr06 | + | View |
GR11G08390 | No description available. | Chr11 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD15G010490 | No description available. | 15 | - | View |
MD06G008640 | No description available. | 6 | + | View |
MD02G003010 | No description available. | 2 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME04151G00290 | No description available. | scaffold04151 | - | View |
ME12498G00250 | No description available. | scaffold12498 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT4G010210 | methyl-CpG-binding domain protein | chr4 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_007G26260 | No description available. | scaffold_7 | + | View |
PPE_003G07290 | No description available. | scaffold_3 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G19240 | No description available. | Chr01 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29841G01160 | No description available. | 29841 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL06G068140 | Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR)%3B contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding | ch06 | + | View |
SL03G116680 | Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR)%3B contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding | ch03 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST03G030130 | Methyl-CpG binding domain containing protein expressed (AHRD V1 *-*- Q2QM23_ORYSJ); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding | chr03 | + | View |
ST06G023670 | Methyl-CpG binding domain containing protein expressed (AHRD V1 *-*- Q2QM23_ORYSJ); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding | chr06 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0006G02280 | No description available. | scaffold_6 | + | View |
TC0009G12360 | No description available. | scaffold_9 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G13660 | similar to AT1G15340|MBD10 | ch1-1 | - | View |
TP3G14110 | similar to AT3G15790|MBD11 | ch3-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV09G06960 | name=GSVIVG01017330001; | chr9 | + | View |
VV11G06710 | name=GSVIVG01015565001; | chr11 | - | View |