Anchorpoints

Gene id
AL2G23860
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL4G03550No description available.scaffold_4-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G74990RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19310.1); Has 4144 Blast hits to 4137 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 2459; Fungi - 476; Plants - 747; Viruses - 18; Other Eukaryotes - 444 (source: NCBI BLink).1-View
AT1G19310RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink). RING/U-box superfamily protein1-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00059G01380No description available.scaffold00059+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G30410No description available.A07-View
BR04G13470No description available.A04-View
BR06G13840No description available.A06-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G04500No description available.Bvchr6.sca005+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G10890No description available.Chr10-View
CL08G15040No description available.Chr8+View
CL01G07780No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00007G05210No description available.CM3.5_scaffold00007+View
CM00014G02710No description available.CM3.5_scaffold00014-View
CM00029G00790No description available.CM3.5_scaffold00029+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00064G00430No description available.supercontig_64-View
CP00062G01030No description available.supercontig_62-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G20560No description available.scaffold_2-View
CRU_004G02890No description available.scaffold_4-View
CRU_001G18100No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G03820No description available.scaffold00002-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G20980No description available.scaffold_9+View
EG0001G03690No description available.scaffold_1-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G51560RING finger protein 5 (probable)LG2+View
FV5G37830RING finger protein 5 (probable)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM11G06780No description available.Gm11-View
GM04G03680No description available.Gm04+View
GM06G03760No description available.Gm06+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G01250No description available.Chr10+View
GR03G01780No description available.Chr03+View
GR02G12970No description available.Chr02+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G031900No description available.chr2-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD08G003270No description available.8+View
MD02G013340No description available.2+View
MD15G019970No description available.15+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06683G00230No description available.scaffold06683-View
ME07012G01520No description available.scaffold07012+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G021895zinc finger C C3HC4 type (RING finger) proteinchr1-View
MT5G019300zinc finger C C3HC4 type (RING finger) proteinchr5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G16960No description available.scaffold_7-View
PPE_001G39150No description available.scaffold_1+View
PPE_008G12320No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT07G03160No description available.Chr07+View
PT14G04040No description available.Chr14-View
PT05G12790No description available.Chr05+View
PT02G13300No description available.Chr02-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G03450No description available.30170-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G109340RING finger protein 5 (AHRD V1 **-- B6UBI0_MAIZE)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech01-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G046670RING finger protein 5 (AHRD V1 **-- B6UBI0_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-typechr01-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G04030No description available.scaffold_1+View
TC0008G02060No description available.scaffold_8-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G30120similar to AT1G74990|zinc finger (C3HC4-type RING finger) family proteinch5-7-View
TP4G02720similar to AT2G23780|zinc finger (C3HC4-type RING finger) family proteinch4-2-View
TP1G17210similar to AT1G19310|zinc finger (C3HC4-type RING finger) family proteinch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G02780name=GSVIVG01019032001;chr4-View


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Gene id
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Description
Chromosome
Strand