Anchorpoints
- Gene id
- AL2G02400
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G62980 | expansin A18 (EXPA18); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A7 (TAIR:AT1G12560.1); Has 2180 Blast hits to 2177 proteins in 164 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 39; Plants - 2093; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A18 | 1 | + | View |
AT1G12560 | expansin A7 (EXPA7); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: sperm cell, root hair, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A18 (TAIR:AT1G62980.1); Has 2192 Blast hits to 2189 proteins in 166 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 53; Plants - 2083; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell and involved in root hair elongation. expansin A7 | 1 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR08G28150 | No description available. | A08 | - | View |
BR09G11020 | No description available. | A09 | + | View |
BR06G08400 | No description available. | A06 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV5G08380 | No description available. | Bvchr5.sca002 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL10G03340 | No description available. | Chr10 | + | View |
CL01G03100 | No description available. | Chr1 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00005G05830 | No description available. | CM3.5_scaffold00005 | + | View |
CM00021G03320 | No description available. | CM3.5_scaffold00021 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00029G00370 | No description available. | supercontig_29 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G01910 | No description available. | scaffold_2 | - | View |
CRU_001G11630 | No description available. | scaffold_1 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00040G00510 | No description available. | scaffold00040 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0004G15780 | No description available. | scaffold_4 | - | View |
EG0005G04600 | No description available. | scaffold_5 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM05G03720 | No description available. | Gm05 | - | View |
GM17G14230 | No description available. | Gm17 | - | View |
GM01G42370 | No description available. | Gm01 | + | View |
GM18G25160 | No description available. | Gm18 | - | View |
GM11G03000 | No description available. | Gm11 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR04G20610 | No description available. | Chr04 | + | View |
GR06G21080 | No description available. | Chr06 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ2G035450 | No description available. | chr2 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME07035G00560 | No description available. | scaffold07035 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G011210 | expansin A10 | chr5 | - | View |
MT4G102450 | expansin A10 | chr4 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_005G09570 | No description available. | scaffold_5 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G11290 | No description available. | Chr01 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30190G02590 | No description available. | 30190 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL08G080060 | Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH)%3B contains Interpro domain(s) IPR002963 Expansin | ch08 | + | View |
SL08G007780 | Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH)%3B contains Interpro domain(s) IPR014734 Pollen allergen%2C N-terminal | ch08 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST08G026100 | Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansin | chr08 | + | View |
ST08G005800 | Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR005132 Rare lipoprotein A | chr08 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0003G26450 | No description available. | scaffold_3 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G11150 | similar to AT1G12560|ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) | ch1-1 | + | View |
TP2G01610 | similar to AT1G62980|ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) | ch2-1 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV02G07520 | name=GSVIVG01019889001; | chr2 | - | View |