PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL1G27140
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G26500	Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62470.1); Has 19147 Blast hits to 7603 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 126; Plants - 18834; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).	1	+	View
AT3G29290	embryo defective 2076 (emb2076); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 34767 Blast hits to 12132 proteins in 265 species: Archae - 2; Bacteria - 30; Metazoa - 249; Fungi - 365; Plants - 32849; Viruses - 0; Other Eukaryotes - 1272 (source: NCBI BLink). Pentatricopeptide repeat (PPR) superfamily protein	3	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR09G29850	No description available.	A09	+	View
BR09G48750	No description available.	A09	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL08G10080	No description available.	Chr8	-	View
CL05G24520	No description available.	Chr5	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00014G08010	No description available.	CM3.5_scaffold00014	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G23560	No description available.	scaffold_1	-	View
CRU_005G07420	No description available.	scaffold_5	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0002G25940	No description available.	scaffold_2	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV0G04320	Putative pentatricopeptide repeat-containing protein At1g26500	scf0513158	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM02G12910	No description available.	Gm02	-	View
GM01G07040	No description available.	Gm01	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT5G044120	PPR containing plant-like protein	chr5	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_001G29700	No description available.	scaffold_1	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST02G034280	Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat	chr02	-	View
ST05G005770	Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KX87_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat	chr05	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0002G33190	No description available.	scaffold_2	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP1G22250	similar to AT1G26500\|pentatricopeptide (PPR) repeat-containing protein	ch1-1	-	View
TP1G12140	similar to AT1G13800\|pentatricopeptide (PPR) repeat-containing protein	ch1-1	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV14G02850	name=GSVIVG01011494001;	chr14	+	View