PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL1G21560
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G05690	No description available.	scaffold_7	+	View
AL3G09400	No description available.	scaffold_3	-	View
AL6G01100	No description available.	scaffold_6	-	View
AL8G25090	No description available.	scaffold_8	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G09240	Protein kinase protein with tetratricopeptide repeat domain Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT5G01060.1); Has 27971 Blast hits to 27600 proteins in 1024 species: Archae - 10; Bacteria - 1536; Metazoa - 3854; Fungi - 205; Plants - 21349; Viruses - 84; Other Eukaryotes - 933 (source: NCBI BLink).	3	-	View
AT2G17090	SHORT SUSPENSOR (SSP); FUNCTIONS IN: binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: suspensor development, positive regulation of intracellular protein kinase cascade, N-terminal protein myristoylation, zygote elongation; LOCATED IN: internal side of plasma membrane; EXPRESSED IN: zygote, sperm cell, male gametophyte, micropylar endosperm, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BR-signaling kinase 1 (TAIR:AT4G35230.1); Has 24310 Blast hits to 24046 proteins in 638 species: Archae - 2; Bacteria - 524; Metazoa - 2907; Fungi - 33; Plants - 20343; Viruses - 55; Other Eukaryotes - 446 (source: NCBI BLink). Encodes a N-myrystolylated plasma membrane associated member of the RLCK II family of IRAK/Pelle-like kinases that regulates the MAPK pathway that promotes the elongation of the Arabidopsis zygote and the development of its basal daughter cell into the extra-embryonic suspensor. SSP transcripts are produced in mature pollen but are not translated until delivery to the zygote and the endosperm after fertilization, exerting a paternal effect on embryonic development. The primary role of its kinase domain may lie in protein binding rather than in catalysis as key residues of the active site are absent. Protein kinase protein with tetratricopeptide repeat domain	2	-	View
AT5G59010	Protein kinase protein with tetratricopeptide repeat domain Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT3G54030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	5	-	View

Amborella trichopoda

Gene id	Description	Chromosome	Strand	Multiplicon
ATR_00029G02430	No description available.	scaffold00029	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR10G28890	No description available.	A10	+	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV0G36830	No description available.	0081.scaffold00279	+	View
BV7G05730	No description available.	Bvchr7.sca021	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL08G09350	No description available.	Chr8	+	View
CL04G07380	No description available.	Chr4	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00029G03950	No description available.	CM3.5_scaffold00029	-	View
CM00096G00540	No description available.	CM3.5_scaffold00096	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00020G01800	No description available.	supercontig_20	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_007G04750	No description available.	scaffold_7	+	View
CRU_003G07980	No description available.	scaffold_3	-	View
CRU_006G00780	No description available.	scaffold_6	-	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00023G01490	No description available.	scaffold00023	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0011G25380	No description available.	scaffold_11	-	View
EG0006G14250	No description available.	scaffold_6	-	View
EG0002G22420	No description available.	scaffold_2	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV2G37490	Probable serine/threonine-protein kinase At4g35230 (similar to)	LG2	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM14G00540	No description available.	Gm14	+	View
GM02G48030	No description available.	Gm02	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR03G12660	No description available.	Chr03	-	View
GR09G09480	No description available.	Chr09	-	View
GR06G17950	No description available.	Chr06	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD08G000360	No description available.	8	+	View
MD03G005940	No description available.	3	-	View
MD12G016450	No description available.	12	+	View
MD04G011410	No description available.	4	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME03150G00690	No description available.	scaffold03150	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT5G098970	LRR receptor-like kinase	chr5	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS03G04050	protein kinase family protein, putative, expressed	3	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_006G27440	No description available.	scaffold_6	+	View
PPE_008G19280	No description available.	scaffold_8	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT05G24930	No description available.	Chr05	-	View
PT16G10580	No description available.	Chr16	+	View
PT01G24640	No description available.	Chr01	+	View
PT06G09390	No description available.	Chr06	+	View
PT09G03950	No description available.	Chr09	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30170G06580	No description available.	30170	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G082260	Receptor protein kinase-like protein (AHRD V1 -* Q9LRY1_ARATH)%3B contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	ch04	-	View
SL09G011750	Receptor-like protein kinase At5g59670 (AHRD V1 -- RLK7_ARATH)%3B contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	ch09	+	View
SL06G076600	Receptor-like protein kinase 2 (AHRD V1 -- RCH2_ARATH)%3B contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	ch06	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST06G032390	Receptor-like kinase (AHRD V1 -- C0SW31_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	chr06	+	View
ST10G023820	Receptor-like kinase (AHRD V1 ***- C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	chr10	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0002G04540	No description available.	scaffold_2	+	View
TC0009G30440	No description available.	scaffold_9	-	View
TC0005G02520	No description available.	scaffold_5	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP6G40450	similar to AT5G01060\|protein kinase family protein	ch6-6	+	View
TP6G20710	similar to AT5G59010\|protein kinase-related	ch6-6	-	View
TP3G07620	similar to AT3G09240\|protein kinase-related	ch3-1	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV03G03910	name=GSVIVG01023930001;	chr3	+	View
VV06G02540	name=GSVIVG01024833001;	chr6	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM01G02480	No description available.	1	+	View