PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00045	13	CH_atr_361	3	3	0.000092579
Amborella trichopoda	scaffold00056	13	CH_atr_118	5	6	0.00000000115431
Lotus japonicus	chr1	13	CH_lja_166	4	23	0.0000478625
Physcomitrella patens	scaffold_30	13	CH_ppa_64	3	3	0.0000868314
Prunus persica	scaffold_1	13	CH_ppe_284	8	80	0.0000000736345
Solanum tuberosum	chr11	13	CH_stu_917	3	3	0.000202567
Solanum tuberosum	chr11	13	CH_stu_207	6	6	0.0000000000010092
Solanum tuberosum	chr12	13	CH_stu_529	6	34	0.00000130347
Solanum tuberosum	chr11	15	CH_stu_13	3	3	0.0000600009

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V