PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_413	2	2	0.000459277
Cucumis melo	CM3.5_scaffold00011	15	CH_cme_8	2	2	0.000459277
Malus domestica	6	13	CH_mdo_556	2	2	0.000692377
Manihot esculenta	scaffold06916	13	CH_mes_429	2	2	0.000949127
Prunus persica	scaffold_3	13	CH_ppe_734	2	2	0.000720851
Ricinus communis	30131	13	CH_rco_393	2	2	0.000589188
Thellungiella parvula	ch6-6	13	CH_tpa_315	2	2	0.000794691
Thellungiella parvula	ch6-6	15	CH_tpa_12	2	2	0.000794691
Theobroma cacao	scaffold_4	13	CH_tca_622	2	2	0.00068171

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V