PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Solanum lycopersicum	ch12	3	CH_sly_520	16	30	0.00028521
Solanum lycopersicum	ch12	6	CH_sly_151	16	30	0.00028521
Vitis vinifera	chr11	2	CH_vvi_273	11	15	0.000178327
Vitis vinifera	chr11	3	CH_vvi_282	13	16	0.000014406

GO term	Description	Number of clusters
GO:0005524	ATP binding	54
GO:0005525	GTP binding	29
GO:0008061	chitin binding	60
GO:0008201	heparin binding	3
GO:0010181	FMN binding	71
GO:0016208	AMP binding	3
GO:0030553	cGMP binding	3
GO:0032549	ribonucleoside binding	11
GO:0032553	ribonucleotide binding	14
GO:0032555	purine ribonucleotide binding	30
GO:0032559	adenyl ribonucleotide binding	76
GO:0043531	ADP binding	1129
GO:2001227	quercitrin binding	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V