PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Cucumis melo	CM3.5_scaffold00067	6	CH_cme_25	66	234	0.0000000029854
Lotus japonicus	chr1	6	CH_lja_41	25	110	0.000972368
Medicago truncatula	chr6	3	CH_mtr_897	25	77	0.000988711
Solanum lycopersicum	ch07	2	CH_sly_51	25	29	9.04966e-16
Solanum lycopersicum	ch07	3	CH_sly_55	26	27	1.59055e-17
Solanum lycopersicum	ch04	4	CH_sly_76	57	219	0.0000132052
Solanum lycopersicum	ch07	5	CH_sly_37	25	29	9.04966e-16
Solanum lycopersicum	ch07	6	CH_sly_43	26	27	1.59055e-17
Solanum tuberosum	chr07	2	CH_stu_85	30	43	0.0000000000000567064

GO term	Description	Number of clusters
GO:0000166	nucleotide binding	38
GO:0000774	adenyl-nucleotide exchange factor activity	4
GO:0005524	ATP binding	54
GO:0005525	GTP binding	29
GO:0005542	folic acid binding	38
GO:0008327	methyl-CpG binding	1
GO:0009374	biotin binding	2
GO:0010013	N-1-naphthylphthalamic acid binding	4
GO:0010181	FMN binding	71
GO:0010427	abscisic acid binding	1
GO:0016208	AMP binding	3
GO:0017076	purine nucleotide binding	9
GO:0019842	vitamin binding	10
GO:0030553	cGMP binding	3
GO:0030554	adenyl nucleotide binding	12
GO:0030976	thiamine pyrophosphate binding	15
GO:0031177	phosphopantetheine binding	3
GO:0031418	L-ascorbic acid binding	11
GO:0032549	ribonucleoside binding	11
GO:0032553	ribonucleotide binding	14
GO:0032555	purine ribonucleotide binding	30
GO:0032559	adenyl ribonucleotide binding	76
GO:0032934	sterol binding	2
GO:0043295	glutathione binding	9
GO:0043531	ADP binding	1129
GO:0050660	flavin adenine dinucleotide binding	43
GO:0050661	NADP binding	7
GO:0051287	NAD binding	53
GO:0070401	NADP+ binding	25
GO:0070403	NAD+ binding	6
GO:0090411	brassinosteroid binding	50

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V