PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Gossypium raimondii	Chr07	2	CH_gra_200	2	2	0.0000534288
Gossypium raimondii	Chr07	3	CH_gra_244	2	2	0.0000534288
Medicago truncatula	chr3	2	CH_mtr_487	2	3	0.0000920344
Medicago truncatula	chr3	3	CH_mtr_616	2	3	0.0000920344
Theobroma cacao	scaffold_5	2	CH_tca_354	2	2	0.00068171
Theobroma cacao	scaffold_8	2	CH_tca_355	2	2	0.00068171
Theobroma cacao	scaffold_5	3	CH_tca_430	2	2	0.00068171
Theobroma cacao	scaffold_8	3	CH_tca_431	2	2	0.00068171

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V