PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Prunus persica	scaffold_7	1	CH_ppe_222	15	25	0.000016934
Prunus persica	scaffold_7	2	CH_ppe_253	15	25	0.0000212394
Prunus persica	scaffold_7	3	CH_ppe_228	17	25	0.00000066975
Prunus persica	scaffold_7	4	CH_ppe_83	15	25	0.000016934
Prunus persica	scaffold_7	5	CH_ppe_90	15	25	0.0000212394
Prunus persica	scaffold_7	6	CH_ppe_98	17	25	0.00000066975
Solanum lycopersicum	ch12	2	CH_sly_331	8	8	0.0000926301
Solanum lycopersicum	ch12	2	CH_sly_432	17	41	0.000422997
Solanum lycopersicum	ch12	3	CH_sly_461	19	41	0.000152992
Solanum lycopersicum	ch12	5	CH_sly_113	17	41	0.000422997
Solanum lycopersicum	ch12	6	CH_sly_142	19	41	0.000152992

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V