PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Gossypium raimondii	Chr01	3	CH_gra_110	5	5	0.00000000200505
Gossypium raimondii	Chr02	3	CH_gra_192	4	5	0.00000462452
Gossypium raimondii	Chr13	3	CH_gra_26	10	13	2.24013e-20
Gossypium raimondii	Chr13	6	CH_gra_24	10	13	2.24013e-20
Populus trichocarpa	Chr01	3	CH_ptr_169	6	13	0.00000000216926
Populus trichocarpa	Chr03	3	CH_ptr_280	4	5	0.00000212903
Populus trichocarpa	Chr03	3	CH_ptr_64	8	11	5.92884e-16
Theobroma cacao	scaffold_13	3	CH_tca_82	7	17	0.0000000000836513
Theobroma cacao	scaffold_2	3	CH_tca_135	5	7	0.0000000238336
Theobroma cacao	scaffold_7	3	CH_tca_236	5	16	0.00000488286

GO term	Description	Number of clusters
GO:0005542	folic acid binding	38
GO:0009374	biotin binding	2
GO:0030976	thiamine pyrophosphate binding	15
GO:0031177	phosphopantetheine binding	3
GO:0031418	L-ascorbic acid binding	11

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V