PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	3	CH_aly_411	3	5	0.000967522
Arabidopsis lyrata	scaffold_1	9	CH_aly_29	3	5	0.000861248
Vitis vinifera	chr17	3	CH_vvi_327	4	13	0.0000597205
Zea mays	2	1	CH_zma_67	4	5	0.000000284063
Zea mays	2	2	CH_zma_73	4	5	0.000000403915

GO term	Description	Number of clusters
GO:0004001	adenosine kinase activity	5
GO:0004017	adenylate kinase activity	1
GO:0004385	guanylate kinase activity	4
GO:0004550	nucleoside diphosphate kinase activity	1
GO:0004797	thymidine kinase activity	3
GO:0004849	uridine kinase activity	3
GO:0019201	nucleotide kinase activity	1
GO:0033862	UMP kinase activity	5

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V