PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_3	1	CH_egr_474	6	14	0.0000417539
Eucalyptus grandis	scaffold_3	2	CH_egr_705	6	14	0.00022939
Eucalyptus grandis	scaffold_3	3	CH_egr_834	6	14	0.000481776

GO term	Description	Number of clusters
GO:0006605	protein targeting	1
GO:0006606	protein import into nucleus	2
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	2
GO:0006620	posttranslational protein targeting to membrane	4
GO:0006623	protein targeting to vacuole	2
GO:0006625	protein targeting to peroxisome	2
GO:0006627	protein processing involved in protein targeting to mitochondrion	3
GO:0006886	intracellular protein transport	4
GO:0009306	protein secretion	2
GO:0016558	protein import into peroxisome matrix	1
GO:0017038	protein import	1
GO:0031204	posttranslational protein targeting to membrane, translocation	4
GO:0042306	regulation of protein import into nucleus	42
GO:0044744	protein targeting to nucleus	2
GO:0045037	protein import into chloroplast stroma	3
GO:0045039	protein import into mitochondrial inner membrane	5
GO:0045040	protein import into mitochondrial outer membrane	9
GO:0046827	positive regulation of protein export from nucleus	1
GO:0050708	regulation of protein secretion	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V