PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	2	CH_aly_143	4	8	0.00000165846
Arabidopsis lyrata	scaffold_5	3	CH_aly_169	4	8	0.00000215638
Arabidopsis thaliana	1	2	CH_ath_340	3	3	0.000254574
Arabidopsis thaliana	3	2	CH_ath_235	4	7	0.0000168939
Arabidopsis thaliana	1	3	CH_ath_359	3	3	0.000254574
Arabidopsis thaliana	3	3	CH_ath_247	4	7	0.0000168939
Brassica rapa	A03	2	CH_bra_168	3	3	0.00006805
Brassica rapa	A06	2	CH_bra_167	3	3	0.00006805
Brassica rapa	A03	3	CH_bra_209	3	3	0.0000723936
Brassica rapa	A06	3	CH_bra_208	3	3	0.0000723936
Thellungiella parvula	ch1-1	2	CH_tpa_108	3	3	0.0000516868
Thellungiella parvula	ch2-4	2	CH_tpa_52	4	4	0.0000000616175
Thellungiella parvula	ch1-1	3	CH_tpa_138	3	3	0.0000620034
Thellungiella parvula	ch2-4	3	CH_tpa_64	4	4	0.0000000788439

GO term	Description	Number of clusters
GO:0080110	sporopollenin biosynthetic process	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V