PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A09	2	CH_bra_294	3	3	0.000754061
Brassica rapa	A09	3	CH_bra_354	3	3	0.000841834
Capsella rubella	scaffold_6	2	CH_cru_108	5	6	0.000000056289
Capsella rubella	scaffold_6	2	CH_cru_199	4	6	0.0000443116
Capsella rubella	scaffold_6	3	CH_cru_235	4	6	0.0000531926
Capsella rubella	scaffold_6	3	CH_cru_129	5	6	0.0000000708353
Capsella rubella	scaffold_6	5	CH_cru_40	10	144	0.00000133097
Capsella rubella	scaffold_6	6	CH_cru_55	10	144	0.00000209862
Thellungiella parvula	ch6-1	2	CH_tpa_212	3	3	0.000720698
Thellungiella parvula	ch6-1	3	CH_tpa_249	3	3	0.000778334

GO term	Description	Number of clusters
GO:0048573	photoperiodism, flowering	1
GO:0048578	positive regulation of long-day photoperiodism, flowering	2
GO:0048579	negative regulation of long-day photoperiodism, flowering	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V