PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_2	2	CH_egr_139	8	9	0.00000000000000183361
Eucalyptus grandis	scaffold_6	2	CH_egr_275	7	14	0.000000000240504
Eucalyptus grandis	scaffold_7	2	CH_egr_59	11	13	3.49835e-22
Eucalyptus grandis	scaffold_7	2	CH_egr_50	13	23	3.75396e-23
Eucalyptus grandis	scaffold_8	2	CH_egr_367	5	6	0.0000000505195
Eucalyptus grandis	scaffold_2	3	CH_egr_158	8	9	0.00000000000000214344
Eucalyptus grandis	scaffold_6	3	CH_egr_322	7	14	0.000000000275436
Eucalyptus grandis	scaffold_7	3	CH_egr_72	11	13	4.35023e-22
Eucalyptus grandis	scaffold_7	3	CH_egr_61	13	23	4.8678e-23
Eucalyptus grandis	scaffold_8	3	CH_egr_436	5	6	0.0000000556168
Eucalyptus grandis	scaffold_7	5	CH_egr_49	13	23	3.75396e-23
Eucalyptus grandis	scaffold_7	5	CH_egr_55	11	13	3.49835e-22
Eucalyptus grandis	scaffold_7	6	CH_egr_57	13	23	4.8678e-23
Eucalyptus grandis	scaffold_7	6	CH_egr_62	11	13	4.35023e-22
Malus domestica	11	2	CH_mdo_121	4	7	0.0000111965
Malus domestica	11	3	CH_mdo_163	4	7	0.0000125018
Medicago truncatula	chr7	2	CH_mtr_231	5	11	0.000000029502
Medicago truncatula	chr7	3	CH_mtr_292	5	11	0.0000000343259

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V