PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_8	5	CH_egr_88	10	26	4.77641e-16
Eucalyptus grandis	scaffold_8	6	CH_egr_105	10	26	0.00000000000000115715
Fragaria vesca	LG2	3	CH_fve_101	6	17	0.00000000546122
Lotus japonicus	chr1	1	CH_lja_14	4	4	0.00000000278943
Populus trichocarpa	Chr02	2	CH_ptr_147	6	17	0.00000000764244
Populus trichocarpa	Chr02	3	CH_ptr_203	6	17	0.0000000215438
Prunus persica	scaffold_1	3	CH_ppe_85	7	13	0.00000000000289815

GO term	Description	Number of clusters
GO:0003333	amino acid transmembrane transport	22
GO:0015802	basic amino acid transport	6
GO:0015804	neutral amino acid transport	4
GO:0015810	aspartate transport	8
GO:0015812	gamma-aminobutyric acid transport	13
GO:0032973	amino acid export	1
GO:0034775	glutathione transmembrane transport	6
GO:0043090	amino acid import	4
GO:0051938	L-glutamate import	2
GO:0080143	regulation of amino acid export	12

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V