PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A10	3	CH_bra_105	3	5	0.000000738591
Medicago truncatula	chr3	1	CH_mtr_151	3	3	0.00000000141179
Medicago truncatula	chr3	2	CH_mtr_181	3	3	0.00000000141179
Medicago truncatula	chr3	3	CH_mtr_220	3	3	0.00000000141179
Solanum lycopersicum	ch03	1	CH_sly_365	2	4	0.000344224
Solanum lycopersicum	ch03	2	CH_sly_402	2	4	0.000344224
Solanum lycopersicum	ch03	3	CH_sly_525	2	4	0.000344224
Solanum tuberosum	chr03	1	CH_stu_448	2	4	0.000341569
Solanum tuberosum	chr03	2	CH_stu_507	2	4	0.000341569
Solanum tuberosum	chr03	3	CH_stu_681	2	4	0.000341569

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V