PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Glycine max	Gm02	1	CH_gma_159	3	3	0.00000139641
Glycine max	Gm02	2	CH_gma_191	3	3	0.00000139641
Glycine max	Gm02	3	CH_gma_265	3	3	0.00000363682
Lotus japonicus	chr2	1	CH_lja_22	3	6	0.000000135575
Lotus japonicus	chr2	2	CH_lja_28	3	6	0.000000135575
Lotus japonicus	chr2	3	CH_lja_44	3	6	0.000000135575
Malus domestica	2	2	CH_mdo_169	3	9	0.0000975951
Medicago truncatula	chr6	3	CH_mtr_572	3	10	0.0000484083
Zea mays	6	1	CH_zma_57	3	3	0.0000000758795
Zea mays	6	2	CH_zma_53	3	3	0.0000000758795
Zea mays	6	3	CH_zma_90	3	3	0.000000318694

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V