PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_34	3	CH_cpa_175	3	4	0.0000644274
Solanum lycopersicum	ch08	1	CH_sly_297	3	3	0.0000749559
Solanum lycopersicum	ch08	2	CH_sly_325	3	3	0.0000749559
Solanum lycopersicum	ch08	3	CH_sly_436	3	3	0.0000854043
Solanum tuberosum	chr08	1	CH_stu_299	3	3	0.00000748735
Solanum tuberosum	chr08	2	CH_stu_331	3	3	0.00000861045
Solanum tuberosum	chr08	3	CH_stu_478	3	3	0.000012641
Zea mays	1	1	CH_zma_125	3	3	0.000027089
Zea mays	1	2	CH_zma_128	3	3	0.0000294792
Zea mays	1	3	CH_zma_201	3	3	0.0000538365

GO term	Description	Number of clusters
GO:0005086	ARF guanyl-nucleotide exchange factor activity	5

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V