PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_4	5	CH_cru_45	10	72	0.00000285317
Capsella rubella	scaffold_4	6	CH_cru_62	10	72	0.0000040787
Fragaria vesca	LG2	2	CH_fve_275	4	9	0.000289844
Fragaria vesca	LG2	3	CH_fve_399	4	9	0.00059351

GO term	Description	Number of clusters
GO:0000155	phosphorelay sensor kinase activity	4
GO:0001653	peptide receptor activity	4
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	5
GO:0004888	transmembrane signaling receptor activity	59
GO:0004930	G-protein coupled receptor activity	4
GO:0004965	G-protein coupled GABA receptor activity	29
GO:0004999	vasoactive intestinal polypeptide receptor activity	3
GO:0005034	osmosensor activity	2
GO:0005044	scavenger receptor activity	2
GO:0008066	glutamate receptor activity	1
GO:0008158	hedgehog receptor activity	2
GO:0016524	latrotoxin receptor activity	3
GO:0038023	signaling receptor activity	33

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V