PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Medicago truncatula	chr3	2	CH_mtr_233	5	6	0.0000000336853
Medicago truncatula	chr3	3	CH_mtr_310	5	6	0.0000000626209
Prunus persica	scaffold_4	4	CH_ppe_59	10	92	0.0000000239936
Prunus persica	scaffold_4	5	CH_ppe_65	10	92	0.0000000797472
Prunus persica	scaffold_4	6	CH_ppe_58	10	41	0.0000000000279767
Solanum lycopersicum	ch12	2	CH_sly_382	5	15	0.000218375
Solanum tuberosum	chr11	4	CH_stu_142	12	230	0.000148606
Solanum tuberosum	chr11	5	CH_stu_170	12	230	0.000375798

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V