PLAZA 3.0 Dicots : Functional Clustering

Functional clusters: Oryza sativa ssp. japonica

Tool for the visualization of the physical clustering of functionally related genes.

Chromosome

Filter

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal	Cluster count
1	GO	Primary GO data only.	2	30	80	0.001	X	396
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X	430
3	GO	All GO data.	2	30	80	0.001	X	499
4	GO	Primary GO data only.	10	150	300	0.001	X	167
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X	176
6	GO	All GO data.	10	150	300	0.001	X	189
7	GO	Primary GO data only.	2	30	80	0.001	V	45
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V	54
9	GO	All GO data.	2	30	80	0.001	V	58
10	GO	Primary GO data only.	10	150	300	0.001	V	65
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V	76
12	GO	All GO data.	10	150	300	0.001	V	80
13	InterPro	No filter applied.	2	30	80	0.001	X	858
14	InterPro	No filter applied.	10	150	300	0.001	X	144
15	InterPro	No filter applied.	2	30	80	0.001	V	80
16	InterPro	No filter applied.	10	150	300	0.001	V	43
17	MapMan	No filter applied.	2	30	80	0.001	X	431
18	MapMan	No filter applied.	10	150	300	0.001	X	124
19	MapMan	No filter applied.	2	30	80	0.001	V	29
20	MapMan	No filter applied.	10	150	300	0.001	V	43