Matrix_101 | ERF5 | Not available | Upstream | -363 |
Matrix_119 | RRTF1 | Not available | Upstream | -362 |
Matrix_138 | RRTF1 | Not available | Upstream | -362 |
Matrix_146 | ORA47 | Not available | Upstream | -363 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -241 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -362 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -245 |
Matrix_189 | WRI1 | An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis | Upstream | -237 |
Matrix_224 | ERF1 | Not available | Upstream | -242 |
Matrix_234 | RAP2.3 | Not available | Upstream | -363 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -240 |
Matrix_272 | DEAR4 | Not available | Upstream | -363 |
Matrix_287 | ERF2 | Not available | Upstream | -241 |
Matrix_288 | RAP2.3 | Not available | Upstream | -362 |
Matrix_295 | ERF1 | Not available | Upstream | -361 |
Matrix_334 | AT3G23230 | Not available | Upstream | -362 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -241 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -362 |
Matrix_360 | ORA59 | Not available | Upstream | -241 |
Matrix_363 | RAP2.3 | Not available | Upstream | -362 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -241 |
Matrix_378 | ATERF1 | Not available | Upstream | -363 |
Matrix_401 | MYB55 | Not available | Upstream | -702 |
Matrix_409 | DEAR3 | Not available | Upstream | -362 |
Matrix_45 | DRN | Not available | Upstream | -241 |
Matrix_462 | ATERF-8 | Not available | Upstream | -361 |
Matrix_473 | RRTF1 | Not available | Upstream | -363 |
Matrix_484 | ATERF13 | Not available | Upstream | -241 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -241 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -242 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -362 |
Matrix_517 | ERF12 | Not available | Upstream | -361 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -362 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -137 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -170 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -842 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -1786 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -580 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -197 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -199 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -145 |
| | | Upstream | -112 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -240 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -134 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -87 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Upstream | -857 |
Motif_530 | CPBCSPOR | The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene | Upstream | -51 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -841 |
| | | Upstream | -205 |
| | | Upstream | -113 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -205 |