View conserved binding sites


Gene
VV19G09280
Description
name=GSVIVG01036683001;
Alias
GSVIVT01036683001;GSVIVG01036683001;GSVIVG01036683001
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-363
Matrix_119RRTF1Not availableUpstream-362
Matrix_138RRTF1Not availableUpstream-362
Matrix_146ORA47Not availableUpstream-363
Matrix_147ERF3;AT1G80580Not availableUpstream-241
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-362
Matrix_171LBD3;LBD4Not availableUpstream-245
Matrix_189WRI1An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesisUpstream-237
Matrix_224ERF1Not availableUpstream-242
Matrix_234RAP2.3Not availableUpstream-363
Matrix_243RAP2.12;RAP2.2Not availableUpstream-240
Matrix_272DEAR4Not availableUpstream-363
Matrix_287ERF2Not availableUpstream-241
Matrix_288RAP2.3Not availableUpstream-362
Matrix_295ERF1Not availableUpstream-361
Matrix_334AT3G23230Not availableUpstream-362
Matrix_344ATERF15;AT4G18450Not availableUpstream-241
Matrix_355ERF10;ERF11Not availableUpstream-362
Matrix_360ORA59Not availableUpstream-241
Matrix_363RAP2.3Not availableUpstream-362
Matrix_374AT5G07580;AT5G61590Not availableUpstream-241
Matrix_378ATERF1Not availableUpstream-363
Matrix_401MYB55Not availableUpstream-702
Matrix_409DEAR3Not availableUpstream-362
Matrix_45DRNNot availableUpstream-241
Matrix_462ATERF-8Not availableUpstream-361
Matrix_473RRTF1Not availableUpstream-363
Matrix_484ATERF13Not availableUpstream-241
Matrix_5AT5G51190;ERF104Not availableUpstream-241
Matrix_50ATERF14;AT5G43410Not availableUpstream-242
Matrix_506DRNL;ATERF-4Not availableUpstream-362
Matrix_517ERF12Not availableUpstream-361
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-362
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-137
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-170
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-842
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1786
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-580
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-197
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-199
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-145
Upstream-112
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-240
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-134
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-87
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-857
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-51
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-841
Upstream-205
Upstream-113
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-205